Last updated on 2023-09-23 09:20:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.2 | 3.19 | 39.75 | 42.94 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 2.99 | 30.10 | 33.09 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 49.13 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 51.05 | ERROR | |||
| r-devel-windows-x86_64 | 0.2.2 | 7.00 | 53.00 | 60.00 | OK | |
| r-patched-linux-x86_64 | 0.2.2 | 3.18 | 36.86 | 40.04 | OK | |
| r-release-linux-x86_64 | 0.2.2 | 3.85 | 37.01 | 40.86 | OK | |
| r-release-macos-arm64 | 0.2.2 | 24.00 | OK | |||
| r-release-macos-x86_64 | 0.2.2 | 32.00 | OK | |||
| r-release-windows-x86_64 | 0.2.2 | 9.00 | 55.00 | 64.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.2 | 27.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.2 | 29.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.2 | 7.00 | 58.00 | 65.00 | OK |
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("gmat")
>
> test_check("gmat")
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 245 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_dag.R:24:3'): upper Cholesky factors are of Cholesky ───────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gRbase::topoSort(igraph::as_graphnel(dag), index = TRUE) at test_dag.R:24:2
2. ├─igraph::as_graphnel(dag)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_dag.R:50:3'): the dag structure is preserved ───────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat (local) expect_equal_dag(m = sample[, , 1], dag = dag) at test_dag.R:50:2
2. │ ├─gRbase::topoSort(igraph::as_graphnel(dag), index = TRUE) at test_dag.R:34:4
3. │ └─igraph::as_graphnel(dag)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_spdcor.R:18:5'): the size of the sample is correct ─────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat (local) f(N = N) at test_spdcor.R:18:4
2. │ └─gmat::ug_to_dag(ug)
3. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
4. │ └─igraph::as_graphnel(ug)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_spdcor.R:27:5'): matrix dimension is correct ───────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat (local) f(p = p) at test_spdcor.R:27:4
2. │ └─gmat::ug_to_dag(ug)
3. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
4. │ └─igraph::as_graphnel(ug)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_spdcor.R:45:5'): matrices are symmetric positive definite ──────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat (local) f(p = p) at test_spdcor.R:45:4
2. │ └─gmat::ug_to_dag(ug)
3. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
4. │ └─igraph::as_graphnel(ug)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_spdcor.R:88:5'): matrices are of correlation ───────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat (local) f(p = p) at test_spdcor.R:88:4
2. │ └─gmat::ug_to_dag(ug)
3. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
4. │ └─igraph::as_graphnel(ug)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_ug.R:38:3'): the graph structure is preserved ──────────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat::port_chol(ug = ug) at test_ug.R:38:2
2. │ └─gmat::ug_to_dag(ug)
3. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
4. │ └─igraph::as_graphnel(ug)
5. └─base::loadNamespace(x)
6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_utils.R:73:3'): the dag orientation of an ug is actually a dag ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat::ug_to_dag(ug = ug) at test_utils.R:73:2
2. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
3. │ └─igraph::as_graphnel(ug)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_utils.R:88:3'): the skeleton of the oriented dag is chordal ────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat::ug_to_dag(ug = ug) at test_utils.R:88:2
2. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
3. │ └─igraph::as_graphnel(ug)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_utils.R:99:3'): the skeleton of the oriented dag contains the original ug, keeping
the order ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat::ug_to_dag(ug = ug) at test_utils.R:99:2
2. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
3. │ └─igraph::as_graphnel(ug)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_utils.R:114:3'): the oriented dag does not contain v-structures ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'graph'
Backtrace:
▆
1. ├─gmat::ug_to_dag(ug = ug) at test_utils.R:114:2
2. │ ├─gRbase::triangulate(igraph::as_graphnel(ug))
3. │ └─igraph::as_graphnel(ug)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 245 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("gmat")
>
> test_check("gmat")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 487 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_dag.R:24:3'): upper Cholesky factors are of Cholesky ───────────
Error in `as(object, "dgCMatrix")`: no method or default for coercing "graphNEL" to "dgCMatrix"
Backtrace:
▆
1. ├─gRbase::topoSort(igraph::as_graphnel(dag), index = TRUE) at test_dag.R:24:2
2. └─gRbase:::topo_sort.default(igraph::as_graphnel(dag), index = TRUE)
3. ├─gRbase::topo_sortMAT(as(object, "dgCMatrix"), index = index)
4. │ └─gRbase:::topo_sortMAT_(amat)
5. └─methods::as(object, "dgCMatrix")
── Error ('test_dag.R:50:3'): the dag structure is preserved ───────────────────
Error in `as(object, "dgCMatrix")`: no method or default for coercing "graphNEL" to "dgCMatrix"
Backtrace:
▆
1. └─gmat (local) expect_equal_dag(m = sample[, , 1], dag = dag) at test_dag.R:50:2
2. ├─gRbase::topoSort(igraph::as_graphnel(dag), index = TRUE) at test_dag.R:34:4
3. └─gRbase:::topo_sort.default(igraph::as_graphnel(dag), index = TRUE)
4. ├─gRbase::topo_sortMAT(as(object, "dgCMatrix"), index = index)
5. │ └─gRbase:::topo_sortMAT_(amat)
6. └─methods::as(object, "dgCMatrix")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 487 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc