Last updated on 2023-09-26 14:05:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 2.26 | 34.46 | 36.72 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 2.15 | 26.46 | 28.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 46.73 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 48.07 | ERROR | |||
| r-devel-windows-x86_64 | 1.0 | 4.00 | 51.00 | 55.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0 | 2.59 | 48.39 | 50.98 | OK | |
| r-release-linux-x86_64 | 1.0 | 2.95 | 46.72 | 49.67 | OK | |
| r-release-macos-arm64 | 1.0 | 22.00 | OK | |||
| r-release-macos-x86_64 | 1.0 | 64.00 | OK | |||
| r-release-windows-x86_64 | 1.0 | 5.00 | 64.00 | 69.00 | OK | |
| r-oldrel-macos-arm64 | 1.0 | 21.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0 | 30.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0 | 5.00 | 70.00 | 75.00 | OK |
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘rMisbeta-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: performance.eval
> ### Title: This function estimates the different performance indices like,
> ### TPR,TNR,FPR,FNR,AUC etc. for number of top genes
> ### Aliases: performance.eval
>
> ### ** Examples
>
> # Performance evaluation in presence of outliers and missing values
> nG=1000
> n1=n2=5
> pde=0.1
> Simdat=Sim2Group(nG,n1,n2,var0=0.1,pde=0.1)
> xx=Simdat$outmat
> TrueDE=Simdat$DEtrue
> MisOutdat<-OutMisDat(xx,pctOut=0.1,pctMis=0.1)
> misdat_zero<-MisOutdat
> misdat_zero[is.na(misdat_zero)]<-0
> cl=rep(c(1,2),each=n1)
>
> res=remat(MisOutdat,cl)
> up_mat<-res$remat
>
>
> pTtest_zero<-pTtest_beta<-NULL
> for (j1 in 1:dim(xx)[1])
+ {
+ DataYY <- data.frame(YY =misdat_zero[j1,], FactorLevels = factor(cl))
+ DataYY2 <- data.frame(YY2=up_mat[j1,], FactorLevels2 = factor(cl))
+ pTtest_zero[j1] <- t.test(YY~FactorLevels,data=DataYY, paired=FALSE)[[3]]
+ pTtest_beta[j1] <- t.test(YY2~FactorLevels2,data=DataYY2, paired=FALSE)[[3]]
+ }
Error in t.test.formula(YY ~ FactorLevels, data = DataYY, paired = FALSE) :
cannot use 'paired' in formula method
Calls: t.test -> t.test.formula
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘rMisbeta-Ex.R’ failed
The error most likely occurred in:
> ### Name: performance.eval
> ### Title: This function estimates the different performance indices like,
> ### TPR,TNR,FPR,FNR,AUC etc. for number of top genes
> ### Aliases: performance.eval
>
> ### ** Examples
>
> # Performance evaluation in presence of outliers and missing values
> nG=1000
> n1=n2=5
> pde=0.1
> Simdat=Sim2Group(nG,n1,n2,var0=0.1,pde=0.1)
> xx=Simdat$outmat
> TrueDE=Simdat$DEtrue
> MisOutdat<-OutMisDat(xx,pctOut=0.1,pctMis=0.1)
> misdat_zero<-MisOutdat
> misdat_zero[is.na(misdat_zero)]<-0
> cl=rep(c(1,2),each=n1)
>
> res=remat(MisOutdat,cl)
> up_mat<-res$remat
>
>
> pTtest_zero<-pTtest_beta<-NULL
> for (j1 in 1:dim(xx)[1])
+ {
+ DataYY <- data.frame(YY =misdat_zero[j1,], FactorLevels = factor(cl))
+ DataYY2 <- data.frame(YY2=up_mat[j1,], FactorLevels2 = factor(cl))
+ pTtest_zero[j1] <- t.test(YY~FactorLevels,data=DataYY, paired=FALSE)[[3]]
+ pTtest_beta[j1] <- t.test(YY2~FactorLevels2,data=DataYY2, paired=FALSE)[[3]]
+ }
Error in t.test.formula(YY ~ FactorLevels, data = DataYY, paired = FALSE) :
cannot use 'paired' in formula method
Calls: t.test -> t.test.formula
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64