Last updated on 2023-09-26 14:05:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 4.50 | 51.49 | 55.99 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 4.17 | 38.29 | 42.46 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 72.16 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 86.57 | ERROR | |||
| r-devel-windows-x86_64 | 0.1.1 | 6.00 | 57.00 | 63.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.1 | 3.17 | 47.88 | 51.05 | OK | |
| r-release-linux-x86_64 | 0.1.1 | 3.02 | 47.91 | 50.93 | OK | |
| r-release-macos-arm64 | 0.1.1 | 32.00 | OK | |||
| r-release-macos-x86_64 | 0.1.1 | 48.00 | OK | |||
| r-release-windows-x86_64 | 0.1.1 | 7.00 | 64.00 | 71.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.1 | 27.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.1 | 48.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.1 | 8.00 | 68.00 | 76.00 | OK |
Version: 0.1.1
Check: examples
Result: ERROR
Running examples in ‘roistats-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: t_test_two_sample
> ### Title: Generate two-sample t-test results for multiple sub-groups
> ### Aliases: t_test_two_sample
>
> ### ** Examples
>
> t_test_two_sample(color_index_two_sample, x = "color_effect", y = "group", paired = TRUE)
Warning: The `t_test_two_sample()` function expects a grouped data frame (i.e., from `dplyr::group_by()`). Returning statistics for the overall comparison
Error in `mutate()`:
ℹ In argument: `ttest = map(...)`.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
Backtrace:
▆
1. ├─roistats::t_test_two_sample(...)
2. │ └─... %>% select(-.data$ttest, -data)
3. ├─dplyr::select(., -.data$ttest, -data)
4. ├─dplyr::mutate(...)
5. ├─dplyr:::mutate.data.frame(...)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─purrr::map(...)
12. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
13. │ ├─purrr:::with_indexed_errors(...)
14. │ │ └─base::withCallingHandlers(...)
15. │ ├─purrr:::call_with_cleanup(...)
16. │ └─roistats (local) .f(.x[[i]], ...)
17. │ ├─stats::t.test(...)
18. │ └─stats:::t.test.formula(...)
19. │ └─base::stop("cannot use 'paired' in formula method")
20. └─base::.handleSimpleError(...)
21. └─purrr (local) h(simpleError(msg, call))
22. └─cli::cli_abort(...)
23. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(roistats)
>
> test_check("roistats")
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-t_test.R:21:3'): t-test-two-sample output ──────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., ttest = map(.data$data, ~t.test(.x[[as_name(enquo(x))]] ~
.x[[as_name(enquo(y))]], paired = paired)), tvalue = map_dbl(.data$ttest,
~extract2(.x, 1)), df = map_dbl(.data$ttest, ~extract2(.x,
2)), p = map_dbl(.data$ttest, ~extract2(.x, 3)))`: i In argument: `ttest = map(...)`.
i In group 1: `roi_id = "AnG"`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘get_started.Rmd’ using rmarkdown
Quitting from lines 114-117 [unnamed-chunk-10] (get_started.Rmd)
Error: processing vignette 'get_started.Rmd' failed with diagnostics:
ℹ In argument: `ttest = map(...)`.
ℹ In group 1: `roi_id = "AnG"`.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
--- failed re-building ‘get_started.Rmd’
SUMMARY: processing the following file failed:
‘get_started.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(roistats)
>
> test_check("roistats")
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-t_test.R:21:3'): t-test-two-sample output ──────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., ttest = map(.data$data, ~t.test(.x[[as_name(enquo(x))]] ~
.x[[as_name(enquo(y))]], paired = paired)), tvalue = map_dbl(.data$ttest,
~extract2(.x, 1)), df = map_dbl(.data$ttest, ~extract2(.x,
2)), p = map_dbl(.data$ttest, ~extract2(.x, 3)))`: i In argument: `ttest = map(...)`.
i In group 1: `roi_id = "AnG"`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: examples
Result: ERROR
Running examples in ‘roistats-Ex.R’ failed
The error most likely occurred in:
> ### Name: t_test_two_sample
> ### Title: Generate two-sample t-test results for multiple sub-groups
> ### Aliases: t_test_two_sample
>
> ### ** Examples
>
> t_test_two_sample(color_index_two_sample, x = "color_effect", y = "group", paired = TRUE)
Warning: The `t_test_two_sample()` function expects a grouped data frame (i.e., from `dplyr::group_by()`). Returning statistics for the overall comparison
Error in `mutate()`:
ℹ In argument: `ttest = map(...)`.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
Backtrace:
▆
1. ├─roistats::t_test_two_sample(...)
2. │ └─... %>% select(-.data$ttest, -data)
3. ├─dplyr::select(., -.data$ttest, -data)
4. ├─dplyr::mutate(...)
5. ├─dplyr:::mutate.data.frame(...)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─purrr::map(...)
12. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
13. │ ├─purrr:::with_indexed_errors(...)
14. │ │ └─base::withCallingHandlers(...)
15. │ ├─purrr:::call_with_cleanup(...)
16. │ └─roistats (local) .f(.x[[i]], ...)
17. │ ├─stats::t.test(...)
18. │ └─stats:::t.test.formula(...)
19. │ └─base::stop("cannot use 'paired' in formula method")
20. └─base::.handleSimpleError(...)
21. └─purrr (local) h(simpleError(msg, call))
22. └─cli::cli_abort(...)
23. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(roistats)
>
> test_check("roistats")
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-t_test.R:21:3'): t-test-two-sample output ──────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., ttest = map(.data$data, ~t.test(.x[[as_name(enquo(x))]] ~
.x[[as_name(enquo(y))]], paired = paired)), tvalue = map_dbl(.data$ttest,
~extract2(.x, 1)), df = map_dbl(.data$ttest, ~extract2(.x,
2)), p = map_dbl(.data$ttest, ~extract2(.x, 3)))`: i In argument: `ttest = map(...)`.
i In group 1: `roi_id = "AnG"`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘get_started.Rmd’ using rmarkdown
Quitting from lines 114-117 [unnamed-chunk-10] (get_started.Rmd)
Error: processing vignette 'get_started.Rmd' failed with diagnostics:
ℹ In argument: `ttest = map(...)`.
ℹ In group 1: `roi_id = "AnG"`.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
--- failed re-building ‘get_started.Rmd’
SUMMARY: processing the following file failed:
‘get_started.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(roistats)
>
> test_check("roistats")
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-t_test.R:21:3'): t-test-two-sample output ──────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., ttest = map(.data$data, ~t.test(.x[[as_name(enquo(x))]] ~
.x[[as_name(enquo(y))]], paired = paired)), tvalue = map_dbl(.data$ttest,
~extract2(.x, 1)), df = map_dbl(.data$ttest, ~extract2(.x,
2)), p = map_dbl(.data$ttest, ~extract2(.x, 3)))`: i In argument: `ttest = map(...)`.
i In group 1: `roi_id = "AnG"`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.1
Check: tests
Result: ERROR
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(roistats)
>
> test_check("roistats")
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-t_test.R:21:3'): t-test-two-sample output ──────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., ttest = map(.data$data, ~t.test(.x[[as_name(enquo(x))]] ~
.x[[as_name(enquo(y))]], paired = paired)), tvalue = map_dbl(.data$ttest,
~extract2(.x, 1)), df = map_dbl(.data$ttest, ~extract2(.x,
2)), p = map_dbl(.data$ttest, ~extract2(.x, 3)))`: i In argument: `ttest = map(...)`.
i In group 1: `roi_id = "AnG"`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `t.test.formula()`:
! cannot use 'paired' in formula method
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 11 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64