Last updated on 2023-10-06 07:56:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 3.94 | 399.37 | 403.31 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 2.38 | 276.40 | 278.78 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 535.74 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 485.11 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.0 | 5.00 | 273.00 | 278.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.0 | 3.95 | 406.96 | 410.91 | ERROR | |
| r-release-linux-x86_64 | 1.0.0 | 3.46 | 411.28 | 414.74 | ERROR | |
| r-release-macos-arm64 | 1.0.0 | 133.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 256.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 5.00 | 377.00 | 382.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.0 | 107.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 170.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 6.00 | 371.00 | 377.00 | ERROR |
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘BCDAG-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: summary.bcdag
> ### Title: bcdag object summaries
> ### Aliases: summary.bcdag
>
> ### ** Examples
>
> n <- 1000
> q <- 4
> DAG <- matrix(c(0,1,1,0,0,0,0,0,0,0,0,0,0,1,1,0), nrow = q)
>
> L <- DAG
> L[L != 0] <- runif(q, 0.2, 1)
> diag(L) <- c(1,1,1,1)
> D <- diag(1, q)
> Sigma <- t(solve(L))%*%D%*%solve(L)
>
> a <- 6
> g <- 1/1000
> U <- g*diag(1,q)
> w = 0.2
>
> set.seed(1)
> X <- mvtnorm::rmvnorm(n, sigma = Sigma)
>
> out <- learn_DAG(1000, 0, X, a, U, w, fast = TRUE, collapse = TRUE, save.memory = FALSE)
Sampling DAGs...
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|======================================================================| 100%> summary(out)
A collapsed bcdag object containing 1000 draws from the posterior distribution of DAGs. (Burnin = 0 ).
Prior hyperparameters:
w = 0.2
a = 6
U = [,1] [,2] [,3] [,4]
[1,] 0.001 0.000 0.000 0.000
[2,] 0.000 0.001 0.000 0.000
[3,] 0.000 0.000 0.001 0.000
[4,] 0.000 0.000 0.000 0.001
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'plot': no method or default for coercing “matrix” to “graphNEL”
Calls: summary -> summary.bcdag -> <Anonymous> -> <Anonymous>
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bcdag_generatedata.Rmd’ using rmarkdown
--- finished re-building ‘bcdag_generatedata.Rmd’
--- re-building ‘bcdag_getfamily.Rmd’ using rmarkdown
Quitting from lines 96-97 [unnamed-chunk-7] (bcdag_getfamily.Rmd)
Error: processing vignette 'bcdag_getfamily.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'plot': no method or default for coercing "matrix" to "graphNEL"
--- failed re-building ‘bcdag_getfamily.Rmd’
--- re-building ‘bcdag_learnDAG.Rmd’ using rmarkdown
--- finished re-building ‘bcdag_learnDAG.Rmd’
SUMMARY: processing the following file failed:
‘bcdag_getfamily.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘BCDAG-Ex.R’ failed
The error most likely occurred in:
> ### Name: summary.bcdag
> ### Title: bcdag object summaries
> ### Aliases: summary.bcdag
>
> ### ** Examples
>
> n <- 1000
> q <- 4
> DAG <- matrix(c(0,1,1,0,0,0,0,0,0,0,0,0,0,1,1,0), nrow = q)
>
> L <- DAG
> L[L != 0] <- runif(q, 0.2, 1)
> diag(L) <- c(1,1,1,1)
> D <- diag(1, q)
> Sigma <- t(solve(L))%*%D%*%solve(L)
>
> a <- 6
> g <- 1/1000
> U <- g*diag(1,q)
> w = 0.2
>
> set.seed(1)
> X <- mvtnorm::rmvnorm(n, sigma = Sigma)
>
> out <- learn_DAG(1000, 0, X, a, U, w, fast = TRUE, collapse = TRUE, save.memory = FALSE)
Sampling DAGs...
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|======================================================================| 100%> summary(out)
A collapsed bcdag object containing 1000 draws from the posterior distribution of DAGs. (Burnin = 0 ).
Prior hyperparameters:
w = 0.2
a = 6
U = [,1] [,2] [,3] [,4]
[1,] 0.001 0.000 0.000 0.000
[2,] 0.000 0.001 0.000 0.000
[3,] 0.000 0.000 0.001 0.000
[4,] 0.000 0.000 0.000 0.001
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'plot': no method or default for coercing “matrix” to “graphNEL”
Calls: summary -> summary.bcdag -> <Anonymous> -> <Anonymous>
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘bcdag_generatedata.Rmd’ using rmarkdown
--- finished re-building ‘bcdag_generatedata.Rmd’
--- re-building ‘bcdag_getfamily.Rmd’ using rmarkdown
Quitting from lines 96-97 [unnamed-chunk-7] (bcdag_getfamily.Rmd)
Error: processing vignette 'bcdag_getfamily.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'plot': no method or default for coercing "matrix" to "graphNEL"
--- failed re-building ‘bcdag_getfamily.Rmd’
--- re-building ‘bcdag_learnDAG.Rmd’ using rmarkdown
--- finished re-building ‘bcdag_learnDAG.Rmd’
SUMMARY: processing the following file failed:
‘bcdag_getfamily.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64