Last updated on 2023-11-06 04:11:43 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 6.08 | 50.35 | 56.43 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 5.24 | 38.00 | 43.24 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 74.42 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 71.61 | NOTE | |||
| r-devel-windows-x86_64 | 0.1.0 | 8.00 | 59.00 | 67.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.0 | 4.09 | 46.02 | 50.11 | ERROR | |
| r-release-linux-x86_64 | 0.1.0 | 4.44 | 46.53 | 50.97 | ERROR | |
| r-release-macos-arm64 | 0.1.0 | 38.00 | OK | |||
| r-release-macos-x86_64 | 0.1.0 | 64.00 | OK | |||
| r-release-windows-x86_64 | 0.1.0 | 9.00 | 61.00 | 70.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.1.0 | 43.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 46.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.0 | 10.00 | 72.00 | 82.00 | OK |
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘rlang’ ‘utils’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘ensemblQueryR-Ex.R’ failed
The error most likely occurred in:
> ### Name: ensemblQueryLDwithSNPpairDataframe
> ### Title: 'ensemblQueryLDwithSNPpairDataframe' applies
> ### 'ensemblQueryLDwithSNPpair' to a data.frame of rsID pairs
> ### Aliases: ensemblQueryLDwithSNPpairDataframe
>
> ### ** Examples
>
> ensemblQueryLDwithSNPpairDataframe(
+ in.table=data.frame(rsid1=rep("rs6792369", 10),
+ rsid2=rep("rs1042779", 10)),
+ pop="1000GENOMES:phase_3:EUR"
+ )
Running ensemblQueryLDwithSNPpairDataframe to retrieve LD metrics for 10 variant pairs...
Error in curl::curl_fetch_memory(url, handle = handle) :
OpenSSL SSL_read: error:0A000126:SSL routines::unexpected eof while reading, errno 0
Calls: ensemblQueryLDwithSNPpairDataframe ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'ensemblQueryR-Ex.R' failed
The error most likely occurred in:
> ### Name: ensemblQueryLDwithSNPpairDataframe
> ### Title: 'ensemblQueryLDwithSNPpairDataframe' applies
> ### 'ensemblQueryLDwithSNPpair' to a data.frame of rsID pairs
> ### Aliases: ensemblQueryLDwithSNPpairDataframe
>
> ### ** Examples
>
> ensemblQueryLDwithSNPpairDataframe(
+ in.table=data.frame(rsid1=rep("rs6792369", 10),
+ rsid2=rep("rs1042779", 10)),
+ pop="1000GENOMES:phase_3:EUR"
+ )
Running ensemblQueryLDwithSNPpairDataframe to retrieve LD metrics for 10 variant pairs...
Windows OS detected. Cannot run parallel queries using parallel::mclapply. Using lapply instead.
Error in curl::curl_fetch_memory(url, handle = handle) :
Failure when receiving data from the peer
Calls: ensemblQueryLDwithSNPpairDataframe ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘ensemblQueryR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ensemblQueryLDwithSNPpairDataframe
> ### Title: 'ensemblQueryLDwithSNPpairDataframe' applies
> ### 'ensemblQueryLDwithSNPpair' to a data.frame of rsID pairs
> ### Aliases: ensemblQueryLDwithSNPpairDataframe
>
> ### ** Examples
>
> ensemblQueryLDwithSNPpairDataframe(
+ in.table=data.frame(rsid1=rep("rs6792369", 10),
+ rsid2=rep("rs1042779", 10)),
+ pop="1000GENOMES:phase_3:EUR"
+ )
Running ensemblQueryLDwithSNPpairDataframe to retrieve LD metrics for 10 variant pairs...
Error in curl::curl_fetch_memory(url, handle = handle) :
GnuTLS recv error (-110): The TLS connection was non-properly terminated.
Calls: ensemblQueryLDwithSNPpairDataframe ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘ensemblQueryR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ensemblQueryLDwithSNPregion
> ### Title: Function to query Ensembl LD data within a genomic window to get
> ### all variant pairs in the specified region and associated LD metrics.
> ### Aliases: ensemblQueryLDwithSNPregion
>
> ### ** Examples
>
> ensemblQueryLDwithSNPregion(
+ chr="6",
+ start="25837556",
+ end="25843455",
+ pop="1000GENOMES:phase_3:EUR"
+ )
Error in curl::curl_fetch_memory(url, handle = handle) :
GnuTLS recv error (-110): The TLS connection was non-properly terminated.
Calls: ensemblQueryLDwithSNPregion ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
Flavor: r-release-linux-x86_64