Last updated on 2024-01-22 23:14:05 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 20.23 | 455.49 | 475.72 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 14.96 | 351.54 | 366.50 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 596.45 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 584.05 | OK | |||
| r-devel-windows-x86_64 | 1.0.1 | 17.00 | 528.00 | 545.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 23.48 | 439.92 | 463.40 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 15.67 | 445.33 | 461.00 | OK | |
| r-release-macos-arm64 | 1.0.1 | 206.00 | OK | |||
| r-release-macos-x86_64 | 1.0.1 | 458.00 | OK | |||
| r-release-windows-x86_64 | 1.0.1 | 23.00 | 587.00 | 610.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 152.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 30.00 | 473.00 | 503.00 | ERROR |
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘Covid19Wastewater-Ex.R’ failed
The error most likely occurred in:
> ### Name: OffsetHeatmap
> ### Title: Outputs a heatmap of the offset for variant / time windows and
> ### population size / region
> ### Aliases: OffsetHeatmap
>
> ### ** Examples
>
> data(WasteWater_data, package = "Covid19Wastewater")
> data("Case_data", package = "Covid19Wastewater")
> data(Pop_data, package = "Covid19Wastewater")
> covarstarts <- c(as.Date("2020-08-17"),
+ as.Date("2021-03-29"))
> covarends <- c(as.Date("2021-01-18"),
+ as.Date("2021-05-24"))
> covarnames <- c("Robin1",
+ "Alpha.V1")
> OffsetHeatmap("kendall_offset", 0, WasteWater_data, Case_data, Pop_data,
+ covarstarts, covarends, covarnames, "pop", TRUE, TRUE)
Joining with `by = join_by(site)`
Joining with `by = join_by(time)`
Error in `geom_rect()`:
! Problem while computing aesthetics.
ℹ Error occurred in the 1st layer.
Caused by error in `as.Date.numeric()`:
! 'origin' must be supplied
Backtrace:
▆
1. ├─base (local) `<fn>`(x)
2. ├─ggplot2:::print.ggplot(x)
3. │ ├─ggplot2::ggplot_build(x)
4. │ └─ggplot2:::ggplot_build.ggplot(x)
5. │ └─ggplot2:::by_layer(...)
6. │ ├─rlang::try_fetch(...)
7. │ │ ├─base::tryCatch(...)
8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
13. │ └─l$compute_aesthetics(d, plot)
14. │ └─ggplot2 (local) compute_aesthetics(..., self = self)
15. │ └─ggplot2:::scales_add_defaults(...)
16. │ └─base::lapply(aesthetics[new_aesthetics], eval_tidy, data = data)
17. │ └─rlang (local) FUN(X[[i]], ...)
18. ├─base::as.Date(start + firstday)
19. ├─base::as.Date.numeric(start + firstday)
20. │ └─base::stop("'origin' must be supplied")
21. └─base::.handleSimpleError(...)
22. └─rlang (local) h(simpleError(msg, call))
23. └─handlers[[1L]](cnd)
24. └─cli::cli_abort(...)
25. └─rlang::abort(...)
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Aux_info_data.Rmd’ using rmarkdown
--- finished re-building ‘Aux_info_data.Rmd’
--- re-building ‘HFG_data_case.Rmd’ using rmarkdown
--- finished re-building ‘HFG_data_case.Rmd’
--- re-building ‘HFG_data_waste.Rmd’ using rmarkdown
--- finished re-building ‘HFG_data_waste.Rmd’
--- re-building ‘Intercepter_data_case.Rmd’ using rmarkdown
--- finished re-building ‘Intercepter_data_case.Rmd’
--- re-building ‘calculated_info.Rmd’ using rmarkdown
--- finished re-building ‘calculated_info.Rmd’
--- re-building ‘example_data.Rmd’ using rmarkdown
--- finished re-building ‘example_data.Rmd’
--- re-building ‘linear_forest.Rmd’ using rmarkdown
--- finished re-building ‘linear_forest.Rmd’
--- re-building ‘longitudinal_data_case.Rmd’ using rmarkdown
--- finished re-building ‘longitudinal_data_case.Rmd’
--- re-building ‘longitudinal_data_waste.Rmd’ using rmarkdown
--- finished re-building ‘longitudinal_data_waste.Rmd’
--- re-building ‘outliers.Rmd’ using rmarkdown
--- finished re-building ‘outliers.Rmd’
--- re-building ‘population_data.Rmd’ using rmarkdown
--- finished re-building ‘population_data.Rmd’
--- re-building ‘smoothing.Rmd’ using rmarkdown
--- finished re-building ‘smoothing.Rmd’
--- re-building ‘time_series_offset.Rmd’ using rmarkdown
Quitting from lines 68-97 [using offset] (time_series_offset.Rmd)
Error: processing vignette 'time_series_offset.Rmd' failed with diagnostics:
Problem while computing aesthetics.
ℹ Error occurred in the 1st layer.
Caused by error in `as.Date.numeric()`:
! 'origin' must be supplied
--- failed re-building ‘time_series_offset.Rmd’
--- re-building ‘variant_data.Rmd’ using rmarkdown
--- finished re-building ‘variant_data.Rmd’
SUMMARY: processing the following file failed:
‘time_series_offset.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Aux_info_data.Rmd' using rmarkdown
--- finished re-building 'Aux_info_data.Rmd'
--- re-building 'HFG_data_case.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
--- finished re-building 'HFG_data_case.Rmd'
--- re-building 'HFG_data_waste.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
--- finished re-building 'HFG_data_waste.Rmd'
--- re-building 'Intercepter_data_case.Rmd' using rmarkdown
--- finished re-building 'Intercepter_data_case.Rmd'
--- re-building 'calculated_info.Rmd' using rmarkdown
--- finished re-building 'calculated_info.Rmd'
--- re-building 'example_data.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
--- finished re-building 'example_data.Rmd'
--- re-building 'linear_forest.Rmd' using rmarkdown
--- finished re-building 'linear_forest.Rmd'
--- re-building 'longitudinal_data_case.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
--- finished re-building 'longitudinal_data_case.Rmd'
--- re-building 'longitudinal_data_waste.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
--- finished re-building 'longitudinal_data_waste.Rmd'
--- re-building 'outliers.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
--- finished re-building 'outliers.Rmd'
--- re-building 'population_data.Rmd' using rmarkdown
--- finished re-building 'population_data.Rmd'
--- re-building 'smoothing.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
--- finished re-building 'smoothing.Rmd'
--- re-building 'time_series_offset.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
Quitting from lines 68-97 [using offset] (time_series_offset.Rmd)
Error: processing vignette 'time_series_offset.Rmd' failed with diagnostics:
Problem while computing aesthetics.
ℹ Error occurred in the 1st layer.
Caused by error in `as.Date.numeric()`:
! 'origin' must be supplied
--- failed re-building 'time_series_offset.Rmd'
--- re-building 'variant_data.Rmd' using rmarkdown
Warning in has_crop_tools() :
TeX Live version too low. Please consider upgrading, e.g., via tinytex::reinstall_tinytex().
--- finished re-building 'variant_data.Rmd'
SUMMARY: processing the following file failed:
'time_series_offset.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64