for non-standard things in the check directory
for non-standard things in the check directory
for non-standard things in the check directory
for non-standard things in the check directory
*
for non-standard things in the check directory
for non-standard things in the check directory
package dependencies
package dependencies
*
*
re-building of vignette outputs

Found the following files/directories:
  ‘MM2S_Predictions_Heatmap.pdf’ ‘MM2S_Predictions_StackedBarplot.pdf’
Found the following files/directories:
  ‘MM2S_Predictions_Heatmap.pdf’ ‘MM2S_Predictions_StackedBarplot.pdf’
Found the following files/directories:
  ‘MM2S_Predictions_Heatmap.pdf’ ‘MM2S_Predictions_StackedBarplot.pdf’
Found the following files/directories:
  ‘MM2S_Predictions_Heatmap.pdf’ ‘MM2S_Predictions_StackedBarplot.pdf’
Found the following files/directories:
  ‘MM2S_Predictions_Heatmap.pdf’ ‘MM2S_Predictions_StackedBarplot.pdf’
Found the following files/directories:
  ‘MM2S_Predictions_Heatmap.pdf’ ‘MM2S_Predictions_StackedBarplot.pdf’
Package required but not available: ‘GSVA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GSVA’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building 'MM2S.Rnw' using knitr

Quitting from lines 94-107 [findMouseModelSubtypes] (MM2S.Rnw)
Error: processing vignette 'MM2S.Rnw' failed with diagnostics:
useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.
--- failed re-building 'MM2S.Rnw'

--- re-building 'MM2S_FromRawData.Rnw' using knitr
--- finished re-building 'MM2S_FromRawData.Rnw'

SUMMARY: processing the following file failed:
  'MM2S.Rnw'

Error: Vignette re-building failed.
Execution halted