Last updated on 2024-03-01 07:52:48 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0 | 18.78 | 146.07 | 164.85 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 3.0 | 11.04 | 104.63 | 115.67 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 3.0 | 204.51 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 3.0 | 203.96 | WARN | |||
| r-devel-windows-x86_64 | 3.0 | 13.00 | 124.00 | 137.00 | WARN | |
| r-patched-linux-x86_64 | 3.0 | 16.69 | 141.75 | 158.44 | OK | |
| r-release-linux-x86_64 | 3.0 | 12.11 | 140.93 | 153.04 | OK | |
| r-release-macos-arm64 | 3.0 | 53.00 | OK | |||
| r-release-macos-x86_64 | 3.0 | 93.00 | OK | |||
| r-release-windows-x86_64 | 3.0 | 17.00 | 147.00 | 164.00 | OK | |
| r-oldrel-macos-arm64 | 3.0 | 59.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.0 | 18.00 | 152.00 | 170.00 | OK |
Version: 3.0
Check: Rd files
Result: NOTE
checkRd: (-1) simfam.Rd:70: Lost braces
70 | The ages at onset correlated within families are generated from the shared frailty model (code{variation = "frailty"}) or the two-gene model (code{variation = "secondene"}), where the residual familial correlation is induced by a frailty or a second gene, respectively, shared within the family.
| ^
checkRd: (-1) simfam.Rd:70: Lost braces
70 | The ages at onset correlated within families are generated from the shared frailty model (code{variation = "frailty"}) or the two-gene model (code{variation = "secondene"}), where the residual familial correlation is induced by a frailty or a second gene, respectively, shared within the family.
| ^
checkRd: (-1) simfam_c.Rd:35: Lost braces
35 | Inverse of variance for the frailty distribution. Dependence within families decreases with depend value. Default is \code{NULL}. Positive real values should be specified when \code{variation="frailty"}. With \code{competing = TRUE}, two values shoud be specified for each event when \code{frailty.dist = "gamma"} or \code{frailty.dist = "lognormal"}, three values should be specified with code{frailty.dist = "cgamma"} or \code{frailty.dist = "clognormal"}. The first two values represent the inverse of variance for each event and the thir value represents the correlation between the two events.
| ^
checkRd: (-1) simfam_c.Rd:46: Lost braces
46 | When code{competing = TRUE}, list of two vectors of baseline parameters for each event should be specified. For example, \code{base.parms=list(c(lambda1, rho1), c(lambda2, rho2))} should be specified for \code{base.dist=c("Weibull", "Weibull")}.
| ^
checkRd: (-1) simfam_c.Rd:50: Lost braces
50 | When code{competing = TRUE}, list of two vectors of regression coefficients for each event should be specified.
| ^
checkRd: (-1) simfam_c.Rd:81: Lost braces
81 | The ages at onset correlated within families are generated from the shared frailty model (code{variation = "frailty"}) or the two-gene model (code{variation = "secondene"}), where the residual familial correlation is induced by a frailty or a second gene, respectively, shared within the family.
| ^
checkRd: (-1) simfam_c.Rd:81: Lost braces
81 | The ages at onset correlated within families are generated from the shared frailty model (code{variation = "frailty"}) or the two-gene model (code{variation = "secondene"}), where the residual familial correlation is induced by a frailty or a second gene, respectively, shared within the family.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 3.0
Check: examples
Result: WARN
Found the following significant warnings:
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
simfam 7.385 0.004 8.714
plot.penmodel 4.402 0.004 5.217
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.0
Check: examples
Result: WARN
Found the following significant warnings:
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
simfam 4.815 0.009 8.266
carrierprob 2.862 0.002 5.045
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.0
Check: examples
Result: WARN
Found the following significant warnings:
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Warning in is.R() : 'is.R' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64