Last updated on 2024-03-28 07:52:44 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 3.57 | 462.26 | 465.83 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 2.37 | 338.97 | 341.34 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 537.37 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 560.26 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 5.00 | 327.00 | 332.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 2.27 | 458.63 | 460.90 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 2.05 | 463.64 | 465.69 | OK | |
| r-release-macos-arm64 | 1.0.0 | 138.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 339.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 5.00 | 415.00 | 420.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 140.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 5.00 | 412.00 | 417.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [247s/510s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(BayesianMCPMod)
>
> test_check("BayesianMCPMod")
Loading required package: rstan
Loading required package: StanHeaders
rstan version 2.32.6 (Stan version 2.32.2)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions,
change `threads_per_chain` option:
rstan_options(threads_per_chain = 1)
Loading required package: shiny
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Using default prior reference scale 7.06484551805801
Using default prior reference scale 7.1096879209905
Using default prior reference scale 7.1096879209905
Using default prior reference scale 7.1096879209905
$Ctr
Univariate normal mixture
Reference scale: 9.21011
Mixture Components:
comp1 comp2 comp3 robust
w 0.24699155 0.23796496 0.01504349 0.50000000
m -12.23859230 -12.26640123 -11.18259121 -12.22005552
s 1.03190075 2.36439673 5.15553875 9.30805148
$DG_1
Univariate normal mixture
Reference scale: 9.308051
Mixture Components:
comp1
w 1.000000
m -12.220056
s 9.308051
$DG_2
Univariate normal mixture
Reference scale: 9.308051
Mixture Components:
comp1
w 1.000000
m -12.220056
s 9.308051
$DG_3
Univariate normal mixture
Reference scale: 9.308051
Mixture Components:
comp1
w 1.000000
m -12.220056
s 9.308051
$`Summary of Posterior Distributions`
mean sd 2.5% 50.0% 97.5%
Ctr -12.22006 6.732746 -27.5325 -12.23543 3.097944
DG_1 -12.22006 9.308051 -30.4635 -12.22006 6.023390
DG_2 -12.22006 9.308051 -30.4635 -12.22006 6.023390
DG_3 -12.22006 9.308051 -30.4635 -12.22006 6.023390
$`Maximum Difference to Control and Dose Group`
max_diff DG
0.01537532 1.00000000
$`Posterior Distributions`
$`Posterior Distributions`$Ctr
Univariate normal mixture
Reference scale: 9.21011
Mixture Components:
comp1 comp2 comp3 robust
w 0.24699155 0.23796496 0.01504349 0.50000000
m -12.23859230 -12.26640123 -11.18259121 -12.22005552
s 1.03190075 2.36439673 5.15553875 9.30805148
$`Posterior Distributions`$DG_1
Univariate normal mixture
Reference scale: 9.308051
Mixture Components:
comp1
w 1.000000
m -12.220056
s 9.308051
$`Posterior Distributions`$DG_2
Univariate normal mixture
Reference scale: 9.308051
Mixture Components:
comp1
w 1.000000
m -12.220056
s 9.308051
$`Posterior Distributions`$DG_3
Univariate normal mixture
Reference scale: 9.308051
Mixture Components:
comp1
w 1.000000
m -12.220056
s 9.308051
Model Coefficients
linear e0 = 0.4 delta = -0.3
Dose Levels
Ctr = 0 DG_1 = 2.5
Predictions, Maximum Effect, gAIC, Model Weights & Significance
Ctr DG_1 mEff gAIC w
0.4 -0.3 0.8 4.0 1.0
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-BMCPMod.R:259:3'): BayesMCPi function works correctly in a simple case ──
result[["sign"]] (`actual`) not equal to 1 (`expected`).
`actual`: 0
`expected`: 1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang