Last updated on 2024-03-28 07:52:43 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.6 | 209.48 | 220.94 | 430.42 | NOTE | --no-tests |
| r-devel-linux-x86_64-debian-gcc | 3.0.6 | 172.37 | 165.27 | 337.64 | NOTE | --no-tests |
| r-devel-linux-x86_64-fedora-clang | 3.0.6 | 2455.68 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 3.0.6 | 2467.11 | ERROR | |||
| r-devel-windows-x86_64 | 3.0.6 | 175.00 | 586.00 | 761.00 | NOTE | |
| r-release-linux-x86_64 | 3.0.6 | 202.65 | 222.37 | 425.02 | NOTE | --no-tests |
| r-release-macos-arm64 | 3.0.6 | 460.00 | ERROR | |||
| r-release-macos-x86_64 | 3.0.6 | 873.00 | ERROR | |||
| r-release-windows-x86_64 | 3.0.6 | 215.00 | 567.00 | 782.00 | ERROR | |
| r-oldrel-macos-arm64 | 3.0.6 | 419.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 3.0.6 | 211.00 | 543.00 | 754.00 | ERROR |
Version: 3.0.6
Flags: --no-tests
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘INLA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 3.0.6
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
extdata 3.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 3.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [30m/73m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.0.6 (2024-03-21) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Loading required package: sp
This is INLA_24.02.09 built 2024-02-09 03:35:28 UTC.
- See www.r-inla.org/contact-us for how to get help.
- List available models/likelihoods/etc with inla.list.models()
- Use inla.doc(<NAME>) to access documentation
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged
Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged
Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
boundary (singular) fit: see help('isSingular')
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [30m/72m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.0.6 (2024-03-21) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Loading required package: sp
This is INLA_24.02.09 built 2024-02-09 03:35:28 UTC.
- See www.r-inla.org/contact-us for how to get help.
- List available models/likelihoods/etc with inla.list.models()
- Use inla.doc(<NAME>) to access documentation
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged
Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged
Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
boundary (singular) fit: see help('isSingular')
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.0.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘INLA’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 3.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [324s/327s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
3. ├─base::suppressWarnings(...) at test-simulateabn.R:799:7
4. │ └─base::withCallingHandlers(...)
5. └─abn::buildScoreCache(...) at test-simulateabn.R:800:9
6. └─abn::buildScoreCache.bayes(...)
7. └─... %do% ...
8. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
9. └─base::library(p, character.only = TRUE)
[ FAIL 30 | WARN 0 | SKIP 35 | PASS 485 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 3.0.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘data_simulation.Rmd’ using rmarkdown
File fit_model-1.png not found in resource path
Error: processing vignette 'data_simulation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building ‘data_simulation.Rmd’
--- re-building ‘mixed_effect_BN_model.Rmd’ using rmarkdown
--- finished re-building ‘mixed_effect_BN_model.Rmd’
--- re-building ‘model_specification.Rmd’ using rmarkdown
--- finished re-building ‘model_specification.Rmd’
--- re-building ‘multiprocessing.Rmd’ using rmarkdown
File benchmarkBoxPlot-1.png not found in resource path
Error: processing vignette 'multiprocessing.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building ‘multiprocessing.Rmd’
--- re-building ‘paper.Rmd’ using rmarkdown
--- finished re-building ‘paper.Rmd’
--- re-building ‘parameter_learning.Rmd’ using rmarkdown
File unnamed-chunk-3-1.png not found in resource path
Error: processing vignette 'parameter_learning.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building ‘parameter_learning.Rmd’
--- re-building ‘quick_start_example.Rmd’ using rmarkdown
--- finished re-building ‘quick_start_example.Rmd’
--- re-building ‘structure_learning.Rmd’ using rmarkdown
--- finished re-building ‘structure_learning.Rmd’
SUMMARY: processing the following files failed:
‘data_simulation.Rmd’ ‘multiprocessing.Rmd’ ‘parameter_learning.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 3.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [10m/10m]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
3. ├─base::suppressWarnings(...) at test-simulateabn.R:799:7
4. │ └─base::withCallingHandlers(...)
5. └─abn::buildScoreCache(...) at test-simulateabn.R:800:9
6. └─abn::buildScoreCache.bayes(...)
7. └─... %do% ...
8. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
9. └─base::library(p, character.only = TRUE)
[ FAIL 30 | WARN 0 | SKIP 35 | PASS 485 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 3.0.6
Check: tests
Result: ERROR
Running 'testthat.R' [295s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.0.6 (2024-03-21) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged
Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged
Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
boundary (singular) fit: see help('isSingular')
[ FAIL 29 | WARN 0 | SKIP 54 | PASS 347 ]
══ Skipped tests (54) ══════════════════════════════════════════════════════════
• BuildScoreCache(method=mle) crashes with Poisson nodes (1):
'test-fitabn_mle.R:132:3'
• INLA is not tested on CRAN (2): 'test-mostprobable.R:203:5',
'test-search_hillclimber.R:77:7'
• Numerical results are not tested for method='bayes' (2):
'test-build_score_cache_bayes.R:51:3', 'test-build_score_cache_bayes.R:104:3'
• On CRAN (27): 'test-abn-methods.R:212:3', 'test-abn-methods.R:237:3',
'test-abn-methods.R:262:3', 'test-abn-methods.R:287:3',
'test-abn-methods.R:312:3', 'test-abn-methods.R:337:3',
'test-abn-methods.R:362:3', 'test-abn-methods.R:387:3',
'test-abn-methods.R:412:3', 'test-build_score_cache.R:380:3',
'test-build_score_cache.R:428:3', 'test-calc_node_inla_glm.R:2:3',
'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3',
'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3',
'test-fitabn.R:190:3', 'test-fitabn_bayes.R:2:3', 'test-mostprobable.R:11:3',
'test-mostprobable.R:78:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3',
'test-simulateabn.R:490:3', 'test-tographviz.R:27:3',
'test-tographviz.R:171:3'
• Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
• empty test (21): 'test-abn-methods.R:15:1', 'test-build_score_cache.R:326:1',
'test-build_score_cache_mle.R:1:1', 'test-build_score_cache_mle.R:34:1',
'test-build_score_cache_mle.R:84:1', 'test-build_score_cache_mle.R:119:1',
'test-build_score_cache_mle.R:155:1', 'test-build_score_cache_mle.R:214:1',
'test-build_score_cache_mle.R:252:1', 'test-fitabn_mle.R:1:1',
'test-fitabn_mle.R:35:1', 'test-fitabn_mle.R:84:1',
'test-fitabn_mle.R:195:1', 'test-fitabn_mle.R:283:1',
'test-fitabn_mle.R:379:1', 'test-fitabn_mle.R:475:1',
'test-fitabn_mle.R:585:1', 'test-simulateabn.R:617:1',
'test-simulateabn.R:688:1', 'test-simulateabn.R:787:1',
'test-simulateabn.R:887:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-abn-methods.R:44:3'): print.abnCache() works. ──────────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-abn-methods.R:44:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:60:3'): print.abnHeuristic() works. ──────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:60:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:79:3'): plot.abnHeuristic() works. ───────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:79:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:105:3'): print.abnHillClimber() works. ───────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:105:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:126:3'): plot.abnHillClimber() works. ────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:126:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:154:3'): print.abnMostprobable() works. ──────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:154:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:175:3'): summary.abnMostprobable() works. ────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:175:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:196:3'): plot.abnMostprobable() works. ───────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:196:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7
── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7
── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7
── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7
── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7
── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7
── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7
6. │ └─testthat:::expect_condition_matching(...)
7. │ └─testthat:::quasi_capture(...)
8. │ ├─testthat (local) .capture(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─abn::buildScoreCache(...)
12. └─abn::buildScoreCache.bayes(...)
13. └─... %do% ...
14. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
15. └─base::library(p, character.only = TRUE)
── Failure ('test-build_score_cache.R:204:7'): buildScoreCache() is backward compatible ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_no_error(...) at test-build_score_cache.R:181:5
── Failure ('test-build_score_cache.R:258:7'): buildScoreCache() is backward compatible ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_no_error(...) at test-build_score_cache.R:220:5
── Failure ('test-build_score_cache.R:321:7'): buildScoreCache() is backward compatible ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_no_error(...) at test-build_score_cache.R:308:5
── Failure ('test-build_score_cache_bayes.R:11:5'): General behaviour of buildScoreCache.bayes() ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-build_score_cache_bayes.R:10:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─testthat::expect_no_error(...) at test-build_score_cache_bayes.R:11:5
── Failure ('test-build_score_cache_bayes.R:17:5'): General behaviour of buildScoreCache.bayes() ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-build_score_cache_bayes.R:16:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─testthat::expect_no_error(...) at test-build_score_cache_bayes.R:17:5
── Error ('test-build_score_cache_bayes.R:20:3'): General behaviour of buildScoreCache.bayes() ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-build_score_cache_bayes.R:20:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─abn::buildScoreCache(...)
5. └─abn::buildScoreCache.bayes(...)
6. └─... %do% ...
7. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
8. └─base::library(p, character.only = TRUE)
── Failure ('test-build_score_cache_bayes.R:43:5'): buildScoreCache.bayes() with Gaussian nodes ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
── Failure ('test-build_score_cache_bayes.R:98:5'): buildScoreCache.bayes() with Binomial nodes ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
── Error ('test-build_score_cache_bayes.R:125:3'): buildScoreCache.bayes() simple, historic numeric test ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-build_score_cache_bayes.R:125:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-mostprobable.R:5:3'): Test mostProbable() works ────────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-mostprobable.R:5:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-mostprobable.R:211:3'): mostProbable() simple, historic numeric test ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-mostprobable.R:211:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-search_heuristic.R:9:3'): searchHeuristic() works. ─────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-search_heuristic.R:9:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-search_hillclimber.R:38:5'): searchHillClimber() is backward compatible with `ex1.dag.data` ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-search_hillclimber.R:38:5
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-search_hillclimber.R:85:3'): searchHillClimber() simple, historic numeric test ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-search_hillclimber.R:85:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
[ FAIL 29 | WARN 0 | SKIP 54 | PASS 347 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 3.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [298s/298s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
3. ├─base::suppressWarnings(...) at test-simulateabn.R:799:7
4. │ └─base::withCallingHandlers(...)
5. └─abn::buildScoreCache(...) at test-simulateabn.R:800:9
6. └─abn::buildScoreCache.bayes(...)
7. └─... %do% ...
8. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
9. └─base::library(p, character.only = TRUE)
[ FAIL 30 | WARN 0 | SKIP 35 | PASS 485 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 3.0.6
Check: tests
Result: ERROR
Running 'testthat.R' [304s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.0.6 (2024-03-21) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged
Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
Iteration 1 - deviance = 798.6166 - criterion = 1.874215
Iteration 2 - deviance = 797.3505 - criterion = 0.03945357
Iteration 3 - deviance = 797.3503 - criterion = 8.411144e-06
Iteration 4 - deviance = 797.3503 - criterion = 6.416675e-13
converged
Iteration 1 - deviance = 800.841 - criterion = 1.953695
Iteration 2 - deviance = 799.4241 - criterion = 0.04384531
Iteration 3 - deviance = 799.424 - criterion = 5.262527e-06
Iteration 4 - deviance = 799.424 - criterion = 7.763524e-13
converged
Iteration 1 - deviance = 733.9755 - criterion = 1.056032
Iteration 2 - deviance = 730.6673 - criterion = 0.04998392
Iteration 3 - deviance = 730.577 - criterion = 0.002808114
Iteration 4 - deviance = 730.5768 - criterion = 7.365004e-06
Iteration 5 - deviance = 730.5768 - criterion = 3.999521e-11
converged
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Iteration 1 - deviance = 801.89 - criterion = 2.014199
Iteration 2 - deviance = 800.5341 - criterion = 0.04426251
Iteration 3 - deviance = 800.5339 - criterion = 5.210016e-06
Iteration 4 - deviance = 800.5339 - criterion = 5.363507e-13
converged
boundary (singular) fit: see help('isSingular')
[ FAIL 29 | WARN 0 | SKIP 54 | PASS 347 ]
══ Skipped tests (54) ══════════════════════════════════════════════════════════
• BuildScoreCache(method=mle) crashes with Poisson nodes (1):
'test-fitabn_mle.R:132:3'
• INLA is not tested on CRAN (2): 'test-mostprobable.R:203:5',
'test-search_hillclimber.R:77:7'
• Numerical results are not tested for method='bayes' (2):
'test-build_score_cache_bayes.R:51:3', 'test-build_score_cache_bayes.R:104:3'
• On CRAN (27): 'test-abn-methods.R:212:3', 'test-abn-methods.R:237:3',
'test-abn-methods.R:262:3', 'test-abn-methods.R:287:3',
'test-abn-methods.R:312:3', 'test-abn-methods.R:337:3',
'test-abn-methods.R:362:3', 'test-abn-methods.R:387:3',
'test-abn-methods.R:412:3', 'test-build_score_cache.R:380:3',
'test-build_score_cache.R:428:3', 'test-calc_node_inla_glm.R:2:3',
'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3',
'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3',
'test-fitabn.R:190:3', 'test-fitabn_bayes.R:2:3', 'test-mostprobable.R:11:3',
'test-mostprobable.R:78:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3',
'test-simulateabn.R:490:3', 'test-tographviz.R:27:3',
'test-tographviz.R:171:3'
• Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
• empty test (21): 'test-abn-methods.R:15:1', 'test-build_score_cache.R:326:1',
'test-build_score_cache_mle.R:1:1', 'test-build_score_cache_mle.R:34:1',
'test-build_score_cache_mle.R:84:1', 'test-build_score_cache_mle.R:119:1',
'test-build_score_cache_mle.R:155:1', 'test-build_score_cache_mle.R:214:1',
'test-build_score_cache_mle.R:252:1', 'test-fitabn_mle.R:1:1',
'test-fitabn_mle.R:35:1', 'test-fitabn_mle.R:84:1',
'test-fitabn_mle.R:195:1', 'test-fitabn_mle.R:283:1',
'test-fitabn_mle.R:379:1', 'test-fitabn_mle.R:475:1',
'test-fitabn_mle.R:585:1', 'test-simulateabn.R:617:1',
'test-simulateabn.R:688:1', 'test-simulateabn.R:787:1',
'test-simulateabn.R:887:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-abn-methods.R:44:3'): print.abnCache() works. ──────────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-abn-methods.R:44:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:60:3'): print.abnHeuristic() works. ──────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:60:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:79:3'): plot.abnHeuristic() works. ───────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:79:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:105:3'): print.abnHillClimber() works. ───────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:105:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:126:3'): plot.abnHillClimber() works. ────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-abn-methods.R:126:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:154:3'): print.abnMostprobable() works. ──────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:154:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:175:3'): summary.abnMostprobable() works. ────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:175:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-abn-methods.R:196:3'): plot.abnMostprobable() works. ───────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-abn-methods.R:196:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7
── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7
── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7
── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7
── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7
── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7
── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7
6. │ └─testthat:::expect_condition_matching(...)
7. │ └─testthat:::quasi_capture(...)
8. │ ├─testthat (local) .capture(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─abn::buildScoreCache(...)
12. └─abn::buildScoreCache.bayes(...)
13. └─... %do% ...
14. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
15. └─base::library(p, character.only = TRUE)
── Failure ('test-build_score_cache.R:204:7'): buildScoreCache() is backward compatible ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_no_error(...) at test-build_score_cache.R:181:5
── Failure ('test-build_score_cache.R:258:7'): buildScoreCache() is backward compatible ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_no_error(...) at test-build_score_cache.R:220:5
── Failure ('test-build_score_cache.R:321:7'): buildScoreCache() is backward compatible ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-build_score_cache.R:179:3
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_no_error(...) at test-build_score_cache.R:308:5
── Failure ('test-build_score_cache_bayes.R:11:5'): General behaviour of buildScoreCache.bayes() ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-build_score_cache_bayes.R:10:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─testthat::expect_no_error(...) at test-build_score_cache_bayes.R:11:5
── Failure ('test-build_score_cache_bayes.R:17:5'): General behaviour of buildScoreCache.bayes() ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-build_score_cache_bayes.R:16:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─testthat::expect_no_error(...) at test-build_score_cache_bayes.R:17:5
── Error ('test-build_score_cache_bayes.R:20:3'): General behaviour of buildScoreCache.bayes() ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-build_score_cache_bayes.R:20:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─abn::buildScoreCache(...)
5. └─abn::buildScoreCache.bayes(...)
6. └─... %do% ...
7. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
8. └─base::library(p, character.only = TRUE)
── Failure ('test-build_score_cache_bayes.R:43:5'): buildScoreCache.bayes() with Gaussian nodes ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
── Failure ('test-build_score_cache_bayes.R:98:5'): buildScoreCache.bayes() with Binomial nodes ──
Expected `{ ... }` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
── Error ('test-build_score_cache_bayes.R:125:3'): buildScoreCache.bayes() simple, historic numeric test ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-build_score_cache_bayes.R:125:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-mostprobable.R:5:3'): Test mostProbable() works ────────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-mostprobable.R:5:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-mostprobable.R:211:3'): mostProbable() simple, historic numeric test ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-mostprobable.R:211:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-search_heuristic.R:9:3'): searchHeuristic() works. ─────────────
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = 2) at test-search_heuristic.R:9:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-search_hillclimber.R:38:5'): searchHillClimber() is backward compatible with `ex1.dag.data` ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(data.df = mydat, data.dists = mydists, max.parents = max.par) at test-search_hillclimber.R:38:5
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
── Error ('test-search_hillclimber.R:85:3'): searchHillClimber() simple, historic numeric test ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. └─abn::buildScoreCache(...) at test-search_hillclimber.R:85:3
2. └─abn::buildScoreCache.bayes(...)
3. └─... %do% ...
4. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
5. └─base::library(p, character.only = TRUE)
[ FAIL 29 | WARN 0 | SKIP 54 | PASS 347 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64