CRAN Package Check Results for Package refseqR

Last updated on 2024-04-30 09:54:06 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 16.38 153.17 169.55 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 12.81 112.94 125.75 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 215.29 OK
r-devel-linux-x86_64-fedora-gcc 1.0.1 159.69 OK
r-devel-windows-x86_64 1.0.1 14.00 155.00 169.00 ERROR
r-patched-linux-x86_64 1.0.1 16.43 144.67 161.10 ERROR
r-release-linux-x86_64 1.0.1 11.37 145.02 156.39 OK
r-release-macos-arm64 1.0.1 106.00 OK
r-release-macos-x86_64 1.0.1 233.00 OK
r-release-windows-x86_64 1.0.1 16.00 159.00 175.00 OK
r-oldrel-macos-arm64 1.0.1 110.00 OK
r-oldrel-macos-x86_64 1.0.1 187.00 OK
r-oldrel-windows-x86_64 1.0.1 20.00 191.00 211.00 OK

Additional issues

ATLAS

Check Details

Version: 1.0.1
Check: examples
Result: ERROR Running examples in 'refseqR-Ex.R' failed The error most likely occurred in: > ### Name: refseq_geneSymbol > ### Title: Get the gene symbol > ### Aliases: refseq_geneSymbol > > ### ** Examples > > # Get the gene symbol from a set of XM accessions > xm = c("XM_004487701", "XM_004488493") > sapply(xm, function(x) refseq_geneSymbol (x, db = "nuccore"), USE.NAMES = FALSE) [1] "LOC101512347" "LOC101506901" > > # Get the gene symbol from a set of XP accessions > xp = c("XP_004487758") > sapply(xp, function(x) refseq_geneSymbol (x, db = "protein"), USE.NAMES = FALSE) Warning in check_xml_errors(x) : BLOB ID IS NOT IMPLEMENTED Warning in check_xml_errors(x) : NCBI C++ Exception: Error: UNK_MODULE(CException::eInvalid) "UNK_FILE", line 18446744073709551615: UNK_FUNC --- Error: Must specify either (not both) 'id' or 'web_history' arguments Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘refseqR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: refseq_XPlength > ### Title: Get the protein length from an XP accession > ### Aliases: refseq_XPlength > > ### ** Examples > > # Get the XM ids from a set of XP accessions > xp = c("XP_004487758", "XP_004488550") > sapply(xp, function(x) refseq_XPlength(x), USE.NAMES = FALSE) Warning: Esummary includes error message: Invalid uid XP_004488550 at position= 0 Error: No esummary records found in file Execution halted Flavor: r-patched-linux-x86_64