Packages required but not available:
  'AnnotationDbi', 'SummarizedExperiment', 'Rsamtools',
  'GenomicFeatures', 'GenomicAlignments'

Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Running examples in ‘pulseTD-Ex.R’ failed
The error most likely occurred in:

> ### Name: estimateExpression
> ### Title: Estimated Expression
> ### Aliases: estimateExpression
> 
> ### ** Examples
> 
> library(TxDb.Hsapiens.UCSC.hg19.knownGene)
Error in library(TxDb.Hsapiens.UCSC.hg19.knownGene) : 
  there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘tutorial.Rmd’ using rmarkdown

Quitting from lines 63-65 [import packages] (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted
Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Running examples in ‘pulseTD-Ex.R’ failed
The error most likely occurred in:

> ### Name: estimateExpression
> ### Title: Estimated Expression
> ### Aliases: estimateExpression
> 
> ### ** Examples
> 
> library(TxDb.Hsapiens.UCSC.hg19.knownGene)
Error in library(TxDb.Hsapiens.UCSC.hg19.knownGene) : 
  there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘tutorial.Rmd’ using rmarkdown

Quitting from lines  at lines 63-65 [import packages] (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted