Last updated on 2024-07-02 08:53:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.0 | 7.53 | 174.11 | 181.64 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.5.0 | 6.31 | 127.27 | 133.58 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.0 | 246.02 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.5.0 | 221.93 | ERROR | |||
| r-devel-windows-x86_64 | 0.5.0 | 8.00 | 141.00 | 149.00 | OK | |
| r-patched-linux-x86_64 | 0.5.0 | 6.74 | 166.40 | 173.14 | ERROR | |
| r-release-linux-x86_64 | 0.5.0 | 5.70 | 162.86 | 168.56 | ERROR | |
| r-release-macos-arm64 | 0.5.0 | 71.00 | OK | |||
| r-release-macos-x86_64 | 0.5.0 | 113.00 | OK | |||
| r-release-windows-x86_64 | 0.5.0 | 9.00 | 143.00 | 152.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.0 | 70.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.5.0 | 245.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.5.0 | 10.00 | 182.00 | 192.00 | OK |
Version: 0.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘cubar.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36504 bytes
Input file size = 36630 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455
Output IDAT size = 27455 bytes (9049 bytes decrease)
Output file size = 27533 bytes (9097 bytes = 24.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3431 bytes
Input file size = 4244 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
Output IDAT size = 3079 bytes (352 bytes decrease)
Output file size = 3157 bytes (1087 bytes = 25.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3340 bytes
Input file size = 4153 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
Output IDAT size = 2981 bytes (359 bytes decrease)
Output file size = 3059 bytes (1094 bytes = 26.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3321 bytes
Input file size = 4140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
Output IDAT size = 2869 bytes (452 bytes decrease)
Output file size = 2947 bytes (1193 bytes = 28.82% decrease)
trying URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
Quitting from lines 114-126 [unnamed-chunk-10] (cubar.Rmd)
Error: processing vignette 'cubar.Rmd' failed with diagnostics:
cannot open URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
--- failed re-building ‘cubar.Rmd’
--- re-building ‘non_standard_genetic_code.Rmd’ using rmarkdown
--- finished re-building ‘non_standard_genetic_code.Rmd’
SUMMARY: processing the following file failed:
‘cubar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘cubar.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36504 bytes
Input file size = 36630 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455
Output IDAT size = 27455 bytes (9049 bytes decrease)
Output file size = 27533 bytes (9097 bytes = 24.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3431 bytes
Input file size = 4244 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
Output IDAT size = 3079 bytes (352 bytes decrease)
Output file size = 3157 bytes (1087 bytes = 25.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3340 bytes
Input file size = 4153 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
Output IDAT size = 2981 bytes (359 bytes decrease)
Output file size = 3059 bytes (1094 bytes = 26.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3321 bytes
Input file size = 4140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
Output IDAT size = 2869 bytes (452 bytes decrease)
Output file size = 2947 bytes (1193 bytes = 28.82% decrease)
trying URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
Quitting from lines 114-126 [unnamed-chunk-10] (cubar.Rmd)
Error: processing vignette 'cubar.Rmd' failed with diagnostics:
cannot open URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
--- failed re-building ‘cubar.Rmd’
--- re-building ‘non_standard_genetic_code.Rmd’ using rmarkdown
--- finished re-building ‘non_standard_genetic_code.Rmd’
SUMMARY: processing the following file failed:
‘cubar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘cubar.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36508 bytes
Input file size = 36634 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27458
Output IDAT size = 27458 bytes (9050 bytes decrease)
Output file size = 27536 bytes (9098 bytes = 24.83% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3431 bytes
Input file size = 4244 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
Output IDAT size = 3079 bytes (352 bytes decrease)
Output file size = 3157 bytes (1087 bytes = 25.61% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3340 bytes
Input file size = 4153 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
Output IDAT size = 2981 bytes (359 bytes decrease)
Output file size = 3059 bytes (1094 bytes = 26.34% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3321 bytes
Input file size = 4140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
Output IDAT size = 2869 bytes (452 bytes decrease)
Output file size = 2947 bytes (1193 bytes = 28.82% decrease)
trying URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
Quitting from lines 114-126 [unnamed-chunk-10] (cubar.Rmd)
Error: processing vignette 'cubar.Rmd' failed with diagnostics:
cannot open URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
--- failed re-building ‘cubar.Rmd’
--- re-building ‘non_standard_genetic_code.Rmd’ using rmarkdown
--- finished re-building ‘non_standard_genetic_code.Rmd’
SUMMARY: processing the following file failed:
‘cubar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘cubar.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36508 bytes
Input file size = 36634 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27458
Output IDAT size = 27458 bytes (9050 bytes decrease)
Output file size = 27536 bytes (9098 bytes = 24.83% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3431 bytes
Input file size = 4244 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
Output IDAT size = 3079 bytes (352 bytes decrease)
Output file size = 3157 bytes (1087 bytes = 25.61% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3340 bytes
Input file size = 4153 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
Output IDAT size = 2981 bytes (359 bytes decrease)
Output file size = 3059 bytes (1094 bytes = 26.34% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3321 bytes
Input file size = 4140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
Output IDAT size = 2869 bytes (452 bytes decrease)
Output file size = 2947 bytes (1193 bytes = 28.82% decrease)
trying URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
Quitting from lines 114-126 [unnamed-chunk-10] (cubar.Rmd)
Error: processing vignette 'cubar.Rmd' failed with diagnostics:
cannot open URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
--- failed re-building ‘cubar.Rmd’
--- re-building ‘non_standard_genetic_code.Rmd’ using rmarkdown
--- finished re-building ‘non_standard_genetic_code.Rmd’
SUMMARY: processing the following file failed:
‘cubar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘cubar.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36504 bytes
Input file size = 36630 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455
Output IDAT size = 27455 bytes (9049 bytes decrease)
Output file size = 27533 bytes (9097 bytes = 24.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3431 bytes
Input file size = 4244 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
Output IDAT size = 3079 bytes (352 bytes decrease)
Output file size = 3157 bytes (1087 bytes = 25.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3340 bytes
Input file size = 4153 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
Output IDAT size = 2981 bytes (359 bytes decrease)
Output file size = 3059 bytes (1094 bytes = 26.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3321 bytes
Input file size = 4140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
Output IDAT size = 2869 bytes (452 bytes decrease)
Output file size = 2947 bytes (1193 bytes = 28.82% decrease)
trying URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
Quitting from lines 114-126 [unnamed-chunk-10] (cubar.Rmd)
Error: processing vignette 'cubar.Rmd' failed with diagnostics:
cannot open URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
--- failed re-building ‘cubar.Rmd’
--- re-building ‘non_standard_genetic_code.Rmd’ using rmarkdown
--- finished re-building ‘non_standard_genetic_code.Rmd’
SUMMARY: processing the following file failed:
‘cubar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘cubar.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36504 bytes
Input file size = 36630 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455
Output IDAT size = 27455 bytes (9049 bytes decrease)
Output file size = 27533 bytes (9097 bytes = 24.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3431 bytes
Input file size = 4244 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079
Output IDAT size = 3079 bytes (352 bytes decrease)
Output file size = 3157 bytes (1087 bytes = 25.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 8 bits/pixel, 241 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3340 bytes
Input file size = 4153 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981
Output IDAT size = 2981 bytes (359 bytes decrease)
Output file size = 3059 bytes (1094 bytes = 26.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3321 bytes
Input file size = 4140 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869
Output IDAT size = 2869 bytes (452 bytes decrease)
Output file size = 2947 bytes (1193 bytes = 28.82% decrease)
trying URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
Quitting from lines 114-126 [unnamed-chunk-10] (cubar.Rmd)
Error: processing vignette 'cubar.Rmd' failed with diagnostics:
cannot open URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa'
--- failed re-building ‘cubar.Rmd’
--- re-building ‘non_standard_genetic_code.Rmd’ using rmarkdown
--- finished re-building ‘non_standard_genetic_code.Rmd’
SUMMARY: processing the following file failed:
‘cubar.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64