Last updated on 2024-08-19 09:52:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 29.27 | 678.26 | 707.53 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 16.78 | 397.33 | 414.11 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 1232.04 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 1113.45 | ERROR | |||
| r-devel-windows-x86_64 | 1.1.0 | 29.00 | 731.00 | 760.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.0 | 25.99 | 645.23 | 671.22 | ERROR | |
| r-release-linux-x86_64 | 1.1.0 | 25.61 | 642.78 | 668.39 | ERROR | |
| r-release-macos-arm64 | 1.1.0 | 250.00 | NOTE | |||
| r-release-macos-x86_64 | 1.1.0 | 445.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1.0 | 19.00 | 589.00 | 608.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.0 | 170.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 401.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 38.00 | 976.00 | 1014.00 | ERROR |
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘packDAMipd-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create_shorttable_from_gtsummary_compare_twogroups_timpoints
> ### Title: Create a table to compare the descriptive analysis (short) from
> ### gtsummary of two groups, but at different timepoints
> ### Aliases: create_shorttable_from_gtsummary_compare_twogroups_timpoints
>
> ### ** Examples
>
> eg_data <- as.data.frame(list(no = c(1, 2, 3, 4),
+ mark_at_1 = c(12, 34, 23, 45), gender = c("M", "F", "M", "F"),
+ mark_at_2 = c(12, 34, 23, 45)))
> outcome_summary <- IPDFileCheck::get_summary_gtsummary(eg_data,
+ c("gender", "mark_at_1", "mark_at_2"), byvar = "gender")
The following errors were returned during `::()`, `gtsummary()`, and
`modify_header()`:
✖ For variable `mark_at_1` (`gender`) and "estimate" statistic: The package
"cardx" (>= 0.2.0) is required.
✖ For variable `mark_at_2` (`gender`) and "estimate" statistic: The package
"cardx" (>= 0.2.0) is required.
Error in `dplyr::mutate()`:
ℹ In argument: `summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
Backtrace:
▆
1. ├─IPDFileCheck::get_summary_gtsummary(...)
2. │ └─... %>% gtsummary::bold_labels()
3. ├─gtsummary::bold_labels(.)
4. ├─gtsummary::modify_header(., label = "**Variable**")
5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**")
6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest)
7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**")
8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size)
9. │ ├─dplyr::select(...)
10. │ ├─dplyr::mutate(...)
11. │ ├─dplyr::mutate(...)
12. │ └─dplyr:::mutate.data.frame(...)
13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
14. │ ├─base::withCallingHandlers(...)
15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
16. │ └─mask$eval_all_mutate(quo)
17. │ └─dplyr (local) eval()
18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]])
19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...)
20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE)
21. ├─variable
22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable)
23. │ └─rlang:::data_pronoun_get(...)
24. └─rlang:::abort_data_pronoun(x, call = y)
25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Imports includes 29 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
extdata 4.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘packDAMipd-Ex.R’ failed
The error most likely occurred in:
> ### Name: create_shorttable_from_gtsummary_compare_twogroups_timpoints
> ### Title: Create a table to compare the descriptive analysis (short) from
> ### gtsummary of two groups, but at different timepoints
> ### Aliases: create_shorttable_from_gtsummary_compare_twogroups_timpoints
>
> ### ** Examples
>
> eg_data <- as.data.frame(list(no = c(1, 2, 3, 4),
+ mark_at_1 = c(12, 34, 23, 45), gender = c("M", "F", "M", "F"),
+ mark_at_2 = c(12, 34, 23, 45)))
> outcome_summary <- IPDFileCheck::get_summary_gtsummary(eg_data,
+ c("gender", "mark_at_1", "mark_at_2"), byvar = "gender")
The following errors were returned during `::()`, `gtsummary()`, and
`modify_header()`:
✖ For variable `mark_at_1` (`gender`) and "estimate" statistic: The package
"cardx" (>= 0.2.0) is required.
✖ For variable `mark_at_2` (`gender`) and "estimate" statistic: The package
"cardx" (>= 0.2.0) is required.
Error in `dplyr::mutate()`:
ℹ In argument: `summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
Backtrace:
▆
1. ├─IPDFileCheck::get_summary_gtsummary(...)
2. │ └─... %>% gtsummary::bold_labels()
3. ├─gtsummary::bold_labels(.)
4. ├─gtsummary::modify_header(., label = "**Variable**")
5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**")
6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest)
7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**")
8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size)
9. │ ├─dplyr::select(...)
10. │ ├─dplyr::mutate(...)
11. │ ├─dplyr::mutate(...)
12. │ └─dplyr:::mutate.data.frame(...)
13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
14. │ ├─base::withCallingHandlers(...)
15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
16. │ └─mask$eval_all_mutate(quo)
17. │ └─dplyr (local) eval()
18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]])
19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...)
20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE)
21. ├─variable
22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable)
23. │ └─rlang:::data_pronoun_get(...)
24. └─rlang:::abort_data_pronoun(x, call = y)
25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘packDAMipd-Ex.R’ failed
The error most likely occurred in:
> ### Name: create_shorttable_from_gtsummary_compare_twogroups_timpoints
> ### Title: Create a table to compare the descriptive analysis (short) from
> ### gtsummary of two groups, but at different timepoints
> ### Aliases: create_shorttable_from_gtsummary_compare_twogroups_timpoints
>
> ### ** Examples
>
> eg_data <- as.data.frame(list(no = c(1, 2, 3, 4),
+ mark_at_1 = c(12, 34, 23, 45), gender = c("M", "F", "M", "F"),
+ mark_at_2 = c(12, 34, 23, 45)))
> outcome_summary <- IPDFileCheck::get_summary_gtsummary(eg_data,
+ c("gender", "mark_at_1", "mark_at_2"), byvar = "gender")
Error in `dplyr::mutate()`:
ℹ In argument: `summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
Backtrace:
▆
1. ├─IPDFileCheck::get_summary_gtsummary(...)
2. │ └─... %>% gtsummary::bold_labels()
3. ├─gtsummary::bold_labels(.)
4. ├─gtsummary::modify_header(., label = "**Variable**")
5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**")
6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest)
7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**")
8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size)
9. │ ├─dplyr::select(...)
10. │ ├─dplyr::mutate(...)
11. │ ├─dplyr::mutate(...)
12. │ └─dplyr:::mutate.data.frame(...)
13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
14. │ ├─base::withCallingHandlers(...)
15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
16. │ └─mask$eval_all_mutate(quo)
17. │ └─dplyr (local) eval()
18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]])
19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...)
20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE)
21. ├─variable
22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable)
23. │ └─rlang:::data_pronoun_get(...)
24. └─rlang:::abort_data_pronoun(x, call = y)
25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc