Last updated on 2024-08-26 09:49:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 4.96 | 55.07 | 60.03 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 4.04 | 39.34 | 43.38 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 99.41 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 93.29 | OK | |||
| r-devel-windows-x86_64 | 1.3.0 | 6.00 | 76.00 | 82.00 | OK | |
| r-patched-linux-x86_64 | 1.3.0 | 5.14 | 52.81 | 57.95 | OK | |
| r-release-linux-x86_64 | 1.3.0 | 3.94 | 53.19 | 57.13 | ERROR | |
| r-release-macos-arm64 | 1.3.0 | 30.00 | NOTE | |||
| r-release-macos-x86_64 | 1.3.0 | 48.00 | OK | |||
| r-release-windows-x86_64 | 1.3.0 | 6.00 | 74.00 | 80.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.3.0 | 29.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.3.0 | 58.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.3.0 | 6.00 | 87.00 | 93.00 | OK |
Version: 1.3.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [28s/36s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check('bold')
Loading required package: bold
[ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ]
══ Skipped tests (59) ══════════════════════════════════════════════════════════
• On CRAN (59): 'test-bold_get_attr.R:2:3', 'test-bold_identify.R:4:3',
'test-bold_identify.R:14:3', 'test-bold_identify.R:25:3',
'test-bold_identify.R:39:3', 'test-bold_seq.R:5:3', 'test-bold_seq.R:18:3',
'test-bold_seq.R:30:3', 'test-bold_seqspec.R:4:3',
'test-bold_seqspec.R:14:3', 'test-bold_seqspec.R:25:3',
'test-bold_seqspec.R:36:3', 'test-bold_seqspec.R:47:3',
'test-bold_specimens.R:4:3', 'test-bold_specimens.R:14:3',
'test-bold_specimens.R:24:3', 'test-bold_specimens.R:34:3',
'test-bold_stats.R:4:3', 'test-bold_stats.R:16:3', 'test-bold_stats.R:30:3',
'test-bold_stats.R:40:3', 'test-bold_stats.R:50:3', 'test-bold_tax_id.R:4:3',
'test-bold_tax_id.R:16:3', 'test-bold_tax_id.R:25:3',
'test-bold_tax_id.R:35:3', 'test-bold_tax_id.R:44:3',
'test-bold_tax_id.R:57:3', 'test-bold_tax_id.R:65:3',
'test-bold_tax_id.R:73:3', 'test-bold_tax_id.R:82:3',
'test-bold_tax_id.R:90:3', 'test-bold_tax_id.R:98:3',
'test-bold_tax_id.R:106:3', 'test-bold_tax_id.R:114:3',
'test-bold_tax_id2.R:4:3', 'test-bold_tax_id2.R:16:3',
'test-bold_tax_id2.R:25:3', 'test-bold_tax_id2.R:41:3',
'test-bold_tax_id2.R:56:3', 'test-bold_tax_id2.R:64:3',
'test-bold_tax_id2.R:72:3', 'test-bold_tax_id2.R:81:3',
'test-bold_tax_id2.R:90:3', 'test-bold_tax_id2.R:102:3',
'test-bold_tax_id2.R:114:3', 'test-bold_tax_id2.R:126:3',
'test-bold_tax_id2.R:134:3', 'test-bold_tax_name.R:4:3',
'test-bold_tax_name.R:13:3', 'test-bold_tax_name.R:22:3',
'test-bold_tax_name.R:43:3', 'test-bold_tax_name.R:53:3',
'test-bold_tax_name.R:68:3', 'test-bold_tax_name.R:79:3',
'test-bold_trace.R:4:3', 'test-bold_trace.R:17:3', 'test-bold_trace.R:30:3',
'test-bold_trace.R:42:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bold_tax_id.R:125:3'): bold_tax_id fails well ──────────────────
<http_500/http_error/error/condition>
Error: Internal Server Error (HTTP 500)
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-bold_tax_id.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─bold::bold_tax_id(id = 88899, includeTree = 5)
7. └─base::lapply(...)
8. └─bold (local) FUN(X[[i]], ...)
9. └─bold:::.get_response_dep(...)
10. └─out$raise_for_status()
11. ├─fauxpas::http(self, behavior = "stop")
12. └─fauxpas:::http.HttpResponse(self, behavior = "stop")
13. └─tmp$do(response)
[ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ]
Error: Test failures
Execution halted
Ran 12/12 deferred expressions
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [16s/22s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check('bold')
Loading required package: bold
[ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ]
══ Skipped tests (59) ══════════════════════════════════════════════════════════
• On CRAN (59): 'test-bold_get_attr.R:2:3', 'test-bold_identify.R:4:3',
'test-bold_identify.R:14:3', 'test-bold_identify.R:25:3',
'test-bold_identify.R:39:3', 'test-bold_seq.R:5:3', 'test-bold_seq.R:18:3',
'test-bold_seq.R:30:3', 'test-bold_seqspec.R:4:3',
'test-bold_seqspec.R:14:3', 'test-bold_seqspec.R:25:3',
'test-bold_seqspec.R:36:3', 'test-bold_seqspec.R:47:3',
'test-bold_specimens.R:4:3', 'test-bold_specimens.R:14:3',
'test-bold_specimens.R:24:3', 'test-bold_specimens.R:34:3',
'test-bold_stats.R:4:3', 'test-bold_stats.R:16:3', 'test-bold_stats.R:30:3',
'test-bold_stats.R:40:3', 'test-bold_stats.R:50:3', 'test-bold_tax_id.R:4:3',
'test-bold_tax_id.R:16:3', 'test-bold_tax_id.R:25:3',
'test-bold_tax_id.R:35:3', 'test-bold_tax_id.R:44:3',
'test-bold_tax_id.R:57:3', 'test-bold_tax_id.R:65:3',
'test-bold_tax_id.R:73:3', 'test-bold_tax_id.R:82:3',
'test-bold_tax_id.R:90:3', 'test-bold_tax_id.R:98:3',
'test-bold_tax_id.R:106:3', 'test-bold_tax_id.R:114:3',
'test-bold_tax_id2.R:4:3', 'test-bold_tax_id2.R:16:3',
'test-bold_tax_id2.R:25:3', 'test-bold_tax_id2.R:41:3',
'test-bold_tax_id2.R:56:3', 'test-bold_tax_id2.R:64:3',
'test-bold_tax_id2.R:72:3', 'test-bold_tax_id2.R:81:3',
'test-bold_tax_id2.R:90:3', 'test-bold_tax_id2.R:102:3',
'test-bold_tax_id2.R:114:3', 'test-bold_tax_id2.R:126:3',
'test-bold_tax_id2.R:134:3', 'test-bold_tax_name.R:4:3',
'test-bold_tax_name.R:13:3', 'test-bold_tax_name.R:22:3',
'test-bold_tax_name.R:43:3', 'test-bold_tax_name.R:53:3',
'test-bold_tax_name.R:68:3', 'test-bold_tax_name.R:79:3',
'test-bold_trace.R:4:3', 'test-bold_trace.R:17:3', 'test-bold_trace.R:30:3',
'test-bold_trace.R:42:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bold_tax_id.R:125:3'): bold_tax_id fails well ──────────────────
<http_500/http_error/error/condition>
Error: Internal Server Error (HTTP 500)
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-bold_tax_id.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─bold::bold_tax_id(id = 88899, includeTree = 5)
7. └─base::lapply(...)
8. └─bold (local) FUN(X[[i]], ...)
9. └─bold:::.get_response_dep(...)
10. └─out$raise_for_status()
11. ├─fauxpas::http(self, behavior = "stop")
12. └─fauxpas:::http.HttpResponse(self, behavior = "stop")
13. └─tmp$do(response)
[ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ]
Error: Test failures
Execution halted
Ran 12/12 deferred expressions
Flavor: r-release-linux-x86_64
Version: 1.3.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘sangerseqR’
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.3.0
Check: tests
Result: ERROR
Running 'test-all.R' [15s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library(testthat)
> test_check('bold')
Loading required package: bold
[ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ]
══ Skipped tests (59) ══════════════════════════════════════════════════════════
• On CRAN (59): 'test-bold_get_attr.R:2:3', 'test-bold_identify.R:4:3',
'test-bold_identify.R:14:3', 'test-bold_identify.R:25:3',
'test-bold_identify.R:39:3', 'test-bold_seq.R:5:3', 'test-bold_seq.R:18:3',
'test-bold_seq.R:30:3', 'test-bold_seqspec.R:4:3',
'test-bold_seqspec.R:14:3', 'test-bold_seqspec.R:25:3',
'test-bold_seqspec.R:36:3', 'test-bold_seqspec.R:47:3',
'test-bold_specimens.R:4:3', 'test-bold_specimens.R:14:3',
'test-bold_specimens.R:24:3', 'test-bold_specimens.R:34:3',
'test-bold_stats.R:4:3', 'test-bold_stats.R:16:3', 'test-bold_stats.R:30:3',
'test-bold_stats.R:40:3', 'test-bold_stats.R:50:3', 'test-bold_tax_id.R:4:3',
'test-bold_tax_id.R:16:3', 'test-bold_tax_id.R:25:3',
'test-bold_tax_id.R:35:3', 'test-bold_tax_id.R:44:3',
'test-bold_tax_id.R:57:3', 'test-bold_tax_id.R:65:3',
'test-bold_tax_id.R:73:3', 'test-bold_tax_id.R:82:3',
'test-bold_tax_id.R:90:3', 'test-bold_tax_id.R:98:3',
'test-bold_tax_id.R:106:3', 'test-bold_tax_id.R:114:3',
'test-bold_tax_id2.R:4:3', 'test-bold_tax_id2.R:16:3',
'test-bold_tax_id2.R:25:3', 'test-bold_tax_id2.R:41:3',
'test-bold_tax_id2.R:56:3', 'test-bold_tax_id2.R:64:3',
'test-bold_tax_id2.R:72:3', 'test-bold_tax_id2.R:81:3',
'test-bold_tax_id2.R:90:3', 'test-bold_tax_id2.R:102:3',
'test-bold_tax_id2.R:114:3', 'test-bold_tax_id2.R:126:3',
'test-bold_tax_id2.R:134:3', 'test-bold_tax_name.R:4:3',
'test-bold_tax_name.R:13:3', 'test-bold_tax_name.R:22:3',
'test-bold_tax_name.R:43:3', 'test-bold_tax_name.R:53:3',
'test-bold_tax_name.R:68:3', 'test-bold_tax_name.R:79:3',
'test-bold_trace.R:4:3', 'test-bold_trace.R:17:3', 'test-bold_trace.R:30:3',
'test-bold_trace.R:42:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bold_tax_id.R:125:3'): bold_tax_id fails well ──────────────────
<http_500/http_error/error/condition>
Error: Internal Server Error (HTTP 500)
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-bold_tax_id.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─bold::bold_tax_id(id = 88899, includeTree = 5)
7. └─base::lapply(...)
8. └─bold (local) FUN(X[[i]], ...)
9. └─bold:::.get_response_dep(...)
10. └─out$raise_for_status()
11. ├─fauxpas::http(self, behavior = "stop")
12. └─fauxpas:::http.HttpResponse(self, behavior = "stop")
13. └─tmp$do(response)
[ FAIL 1 | WARN 17 | SKIP 59 | PASS 112 ]
Error: Test failures
Execution halted
Ran 12/12 deferred expressions
Flavor: r-release-windows-x86_64