checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
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Running examples in ‘mra-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: F.cjs.covars
> ### Title: F.cjs.covars
> ### Aliases: F.cjs.covars
> ### Keywords: models
> 
> ### ** Examples
> 
> ##  Fit CJS model to dipper data, time-varying capture and survivals.
> data(dipper.histories)
> xy <- F.cjs.covars( nrow(dipper.histories), ncol(dipper.histories) )
> dipper.cjs <- F.cjs.estim( capture=~xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5]+xy$x[,,6], 
+ 	survival=~xy$x[,,1]+xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5], dipper.histories )
Error in F.cjs.estim(capture = ~xy$x[, , 2] + xy$x[, , 3] + xy$x[, , 4] +  : 
  Capture histories must consist of 0's, 1's, and 2's only.
Execution halted
checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
checkRd: (-1) F.huggins.estim.Rd:205: Escaped LaTeX specials: \$
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checkRd: (-1) lines.cjs.Rd:15: Escaped LaTeX specials: \$
Running examples in ‘mra-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: F.cjs.covars
> ### Title: F.cjs.covars
> ### Aliases: F.cjs.covars
> ### Keywords: models
> 
> ### ** Examples
> 
> ##  Fit CJS model to dipper data, time-varying capture and survivals.
> data(dipper.histories)
> xy <- F.cjs.covars( nrow(dipper.histories), ncol(dipper.histories) )
> dipper.cjs <- F.cjs.estim( capture=~xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5]+xy$x[,,6], 
+ 	survival=~xy$x[,,1]+xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5], dipper.histories )
Error in F.cjs.estim(capture = ~xy$x[, , 2] + xy$x[, , 3] + xy$x[, , 4] +  : 
  Capture histories must consist of 0's, 1's, and 2's only.
Execution halted
checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
checkRd: (-1) F.huggins.estim.Rd:205: Escaped LaTeX specials: \$
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checkRd: (-1) lines.cjs.Rd:15: Escaped LaTeX specials: \$
Running examples in ‘mra-Ex.R’ failed
The error most likely occurred in:

> ### Name: F.cjs.covars
> ### Title: F.cjs.covars
> ### Aliases: F.cjs.covars
> ### Keywords: models
> 
> ### ** Examples
> 
> ##  Fit CJS model to dipper data, time-varying capture and survivals.
> data(dipper.histories)
> xy <- F.cjs.covars( nrow(dipper.histories), ncol(dipper.histories) )
> dipper.cjs <- F.cjs.estim( capture=~xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5]+xy$x[,,6], 
+ 	survival=~xy$x[,,1]+xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5], dipper.histories )
Error in F.cjs.estim(capture = ~xy$x[, , 2] + xy$x[, , 3] + xy$x[, , 4] +  : 
  Capture histories must consist of 0's, 1's, and 2's only.
Execution halted
checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
checkRd: (-1) F.huggins.estim.Rd:205: Escaped LaTeX specials: \$
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checkRd: (-1) lines.cjs.Rd:15: Escaped LaTeX specials: \$
Running examples in ‘mra-Ex.R’ failed
The error most likely occurred in:

> ### Name: F.cjs.covars
> ### Title: F.cjs.covars
> ### Aliases: F.cjs.covars
> ### Keywords: models
> 
> ### ** Examples
> 
> ##  Fit CJS model to dipper data, time-varying capture and survivals.
> data(dipper.histories)
> xy <- F.cjs.covars( nrow(dipper.histories), ncol(dipper.histories) )
> dipper.cjs <- F.cjs.estim( capture=~xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5]+xy$x[,,6], 
+ 	survival=~xy$x[,,1]+xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5], dipper.histories )
Error in F.cjs.estim(capture = ~xy$x[, , 2] + xy$x[, , 3] + xy$x[, , 4] +  : 
  Capture histories must consist of 0's, 1's, and 2's only.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘CJS_examples.Rmd’ using rmarkdown

Quitting from lines 37-39 [unnamed-chunk-3] (CJS_examples.Rmd)
Error: processing vignette 'CJS_examples.Rmd' failed with diagnostics:
Capture histories must consist of 0's, 1's, and 2's only.
--- failed re-building ‘CJS_examples.Rmd’

SUMMARY: processing the following file failed:
  ‘CJS_examples.Rmd’

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
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Running examples in 'mra-Ex.R' failed
The error most likely occurred in:

> ### Name: F.cjs.covars
> ### Title: F.cjs.covars
> ### Aliases: F.cjs.covars
> ### Keywords: models
> 
> ### ** Examples
> 
> ##  Fit CJS model to dipper data, time-varying capture and survivals.
> data(dipper.histories)
> xy <- F.cjs.covars( nrow(dipper.histories), ncol(dipper.histories) )
> dipper.cjs <- F.cjs.estim( capture=~xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5]+xy$x[,,6], 
+ 	survival=~xy$x[,,1]+xy$x[,,2]+xy$x[,,3]+xy$x[,,4]+xy$x[,,5], dipper.histories )
Error in F.cjs.estim(capture = ~xy$x[, , 2] + xy$x[, , 3] + xy$x[, , 4] +  : 
  Capture histories must consist of 0's, 1's, and 2's only.
Execution halted
checkRd: (-1) F.huggins.estim.Rd:199: Escaped LaTeX specials: \$ \$
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