Running examples in ‘soilassessment-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: ‘sp’

The following objects are masked from ‘package:aqp’:

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error: unable to find an inherited method for function ‘coordinates<-’ for signature ‘object = "SoilProfileCollection"’
Execution halted
Running examples in ‘soilassessment-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: ‘sp’

The following objects are masked from ‘package:aqp’:

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error: unable to find an inherited method for function ‘coordinates<-’ for signature ‘object = "SoilProfileCollection"’
Execution halted
Running examples in ‘soilassessment-Ex.R’ failed
The error most likely occurred in:

> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: ‘sp’

The following objects are masked from ‘package:aqp’:

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error: unable to find an inherited method for function ‘coordinates<-’ for signature ‘object = "SoilProfileCollection"’
Execution halted
Running examples in ‘soilassessment-Ex.R’ failed
The error most likely occurred in:

> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: ‘sp’

The following objects are masked from ‘package:aqp’:

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error: unable to find an inherited method for function ‘coordinates<-’ for signature ‘object = "SoilProfileCollection"’
Execution halted
Running examples in 'soilassessment-Ex.R' failed
The error most likely occurred in:

> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: 'sp'

The following objects are masked from 'package:aqp':

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error: unable to find an inherited method for function 'coordinates<-' for signature 'object = "SoilProfileCollection"'
Execution halted
Running examples in ‘soilassessment-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: ‘sp’

The following objects are masked from ‘package:aqp’:

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error: unable to find an inherited method for function ‘coordinates<-’ for signature ‘object = "SoilProfileCollection"’
Execution halted
Running examples in ‘soilassessment-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: ‘sp’

The following objects are masked from ‘package:aqp’:

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error: unable to find an inherited method for function ‘coordinates<-’ for signature ‘object = "SoilProfileCollection"’
Execution halted
Running examples in 'soilassessment-Ex.R' failed
The error most likely occurred in:

> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: 'sp'

The following objects are masked from 'package:aqp':

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error: unable to find an inherited method for function 'coordinates<-' for signature 'object = "SoilProfileCollection"'
Execution halted
Running examples in 'soilassessment-Ex.R' failed
The error most likely occurred in:

> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: 'sp'

The following objects are masked from 'package:aqp':

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'coordinates<-' for signature '"SoilProfileCollection"'
Calls: coordinates<- -> <Anonymous>
Execution halted