Last updated on 2025-03-08 05:50:54 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6.1 | 13.54 | 164.89 | 178.43 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.6.1 | 7.36 | 110.40 | 117.76 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.6.1 | 314.05 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.6.1 | 309.11 | ERROR | |||
| r-devel-macos-arm64 | 1.6.1 | 88.00 | OK | |||
| r-devel-macos-x86_64 | 1.6.1 | 151.00 | OK | |||
| r-devel-windows-x86_64 | 1.6.1 | 15.00 | 181.00 | 196.00 | ERROR | |
| r-patched-linux-x86_64 | 1.6.1 | OK | ||||
| r-release-linux-x86_64 | 1.6.1 | 11.15 | 150.08 | 161.23 | OK | |
| r-release-macos-arm64 | 1.6.1 | 82.00 | NOTE | |||
| r-release-macos-x86_64 | 1.6.1 | 201.00 | NOTE | |||
| r-release-windows-x86_64 | 1.6.1 | 14.00 | 172.00 | 186.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.6.1 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.6.1 | 178.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.6.1 | 19.00 | 220.00 | 239.00 | NOTE |
Version: 1.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [42s/56s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 63%)
adding: report_dependencies6c8ce7082204e/ (stored 0%)
adding: report_dependencies6c8ce7082204e/file6c8ce2417916f.html (deflated 8%)
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
══ Skipped tests (31) ══════════════════════════════════════════════════════════
• On CRAN (31): 'test_knitPrint.R:35:2', 'test_knitPrint.R:76:2',
'test_knitPrint.R:129:2', 'test_knitPrint.R:182:2', 'test_knitPrint.R:228:2',
'test_knitPrint.R:290:2', 'test_render_clinDataReviewReport.R:371:2',
'test_render_clinDataReviewReport.R:414:2',
'test_render_clinDataReviewReport.R:452:2',
'test_render_clinDataReviewReport.R:497:2',
'test_render_clinDataReviewReport.R:561:2',
'test_render_clinDataReviewReport.R:633:2',
'test_render_clinDataReviewReport.R:700:2',
'test_render_clinDataReviewReport.R:758:2',
'test_render_clinDataReviewReport.R:816:2',
'test_render_clinDataReviewReport.R:874:2',
'test_render_clinDataReviewReport.R:1048:2',
'test_render_clinDataReviewReport.R:1119:3',
'test_render_clinDataReviewReport.R:1230:2',
'test_render_clinDataReviewReport.R:1371:3',
'test_render_clinDataReviewReport.R:1489:3', 'test_skeleton.R:92:2',
'test_skeleton.R:132:3', 'test_templates.R:53:2', 'test_templates.R:100:3',
'test_templates.R:162:2', 'test_templates.R:208:2', 'test_templates.R:255:2',
'test_templates.R:306:3', 'test_templates.R:369:2', 'test_templates.R:418:2'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_annotateData.R:207:2'): Data is correctly annotated based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:207:9
── Error ('test_annotateData.R:237:2'): Data is correctly annotated with a specified variable based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:237:9
── Error ('test_annotateData.R:371:2'): Data is correctly annotated based on the preset 'demographics' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:371:9
── Error ('test_annotateData.R:456:2'): Data is correctly annotated based on the preset 'exposed_subjects' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:456:9
── Error ('test_annotateData.R:490:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a subject variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:490:9
── Error ('test_annotateData.R:515:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a start time variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:515:9
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [26s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 63%)
adding: report_dependencies1814f3b4bf4ea/ (stored 0%)
adding: report_dependencies1814f3b4bf4ea/file1814f74352bcc.html (deflated 8%)
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
══ Skipped tests (31) ══════════════════════════════════════════════════════════
• On CRAN (31): 'test_knitPrint.R:35:2', 'test_knitPrint.R:76:2',
'test_knitPrint.R:129:2', 'test_knitPrint.R:182:2', 'test_knitPrint.R:228:2',
'test_knitPrint.R:290:2', 'test_render_clinDataReviewReport.R:371:2',
'test_render_clinDataReviewReport.R:414:2',
'test_render_clinDataReviewReport.R:452:2',
'test_render_clinDataReviewReport.R:497:2',
'test_render_clinDataReviewReport.R:561:2',
'test_render_clinDataReviewReport.R:633:2',
'test_render_clinDataReviewReport.R:700:2',
'test_render_clinDataReviewReport.R:758:2',
'test_render_clinDataReviewReport.R:816:2',
'test_render_clinDataReviewReport.R:874:2',
'test_render_clinDataReviewReport.R:1048:2',
'test_render_clinDataReviewReport.R:1119:3',
'test_render_clinDataReviewReport.R:1230:2',
'test_render_clinDataReviewReport.R:1371:3',
'test_render_clinDataReviewReport.R:1489:3', 'test_skeleton.R:92:2',
'test_skeleton.R:132:3', 'test_templates.R:53:2', 'test_templates.R:100:3',
'test_templates.R:162:2', 'test_templates.R:208:2', 'test_templates.R:255:2',
'test_templates.R:306:3', 'test_templates.R:369:2', 'test_templates.R:418:2'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_annotateData.R:207:2'): Data is correctly annotated based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:207:9
── Error ('test_annotateData.R:237:2'): Data is correctly annotated with a specified variable based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:237:9
── Error ('test_annotateData.R:371:2'): Data is correctly annotated based on the preset 'demographics' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:371:9
── Error ('test_annotateData.R:456:2'): Data is correctly annotated based on the preset 'exposed_subjects' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:456:9
── Error ('test_annotateData.R:490:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a subject variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:490:9
── Error ('test_annotateData.R:515:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a start time variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:515:9
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [72s/212s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 63%)
adding: report_dependencies2cf1a649512fe4/ (stored 0%)
adding: report_dependencies2cf1a649512fe4/file2cf1a63a677c6f.html (deflated 8%)
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
══ Skipped tests (31) ══════════════════════════════════════════════════════════
• On CRAN (31): 'test_knitPrint.R:35:2', 'test_knitPrint.R:76:2',
'test_knitPrint.R:129:2', 'test_knitPrint.R:182:2', 'test_knitPrint.R:228:2',
'test_knitPrint.R:290:2', 'test_render_clinDataReviewReport.R:371:2',
'test_render_clinDataReviewReport.R:414:2',
'test_render_clinDataReviewReport.R:452:2',
'test_render_clinDataReviewReport.R:497:2',
'test_render_clinDataReviewReport.R:561:2',
'test_render_clinDataReviewReport.R:633:2',
'test_render_clinDataReviewReport.R:700:2',
'test_render_clinDataReviewReport.R:758:2',
'test_render_clinDataReviewReport.R:816:2',
'test_render_clinDataReviewReport.R:874:2',
'test_render_clinDataReviewReport.R:1048:2',
'test_render_clinDataReviewReport.R:1119:3',
'test_render_clinDataReviewReport.R:1230:2',
'test_render_clinDataReviewReport.R:1371:3',
'test_render_clinDataReviewReport.R:1489:3', 'test_skeleton.R:92:2',
'test_skeleton.R:132:3', 'test_templates.R:53:2', 'test_templates.R:100:3',
'test_templates.R:162:2', 'test_templates.R:208:2', 'test_templates.R:255:2',
'test_templates.R:306:3', 'test_templates.R:369:2', 'test_templates.R:418:2'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_annotateData.R:207:2'): Data is correctly annotated based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:207:9
── Error ('test_annotateData.R:237:2'): Data is correctly annotated with a specified variable based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:237:9
── Error ('test_annotateData.R:371:2'): Data is correctly annotated based on the preset 'demographics' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:371:9
── Error ('test_annotateData.R:456:2'): Data is correctly annotated based on the preset 'exposed_subjects' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:456:9
── Error ('test_annotateData.R:490:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a subject variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:490:9
── Error ('test_annotateData.R:515:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a start time variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:515:9
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [68s/185s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 63%)
adding: report_dependencies133c9a448514cc/ (stored 0%)
adding: report_dependencies133c9a448514cc/file133c9a18ab2cdc.html (deflated 8%)
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
══ Skipped tests (31) ══════════════════════════════════════════════════════════
• On CRAN (31): 'test_knitPrint.R:35:2', 'test_knitPrint.R:76:2',
'test_knitPrint.R:129:2', 'test_knitPrint.R:182:2', 'test_knitPrint.R:228:2',
'test_knitPrint.R:290:2', 'test_render_clinDataReviewReport.R:371:2',
'test_render_clinDataReviewReport.R:414:2',
'test_render_clinDataReviewReport.R:452:2',
'test_render_clinDataReviewReport.R:497:2',
'test_render_clinDataReviewReport.R:561:2',
'test_render_clinDataReviewReport.R:633:2',
'test_render_clinDataReviewReport.R:700:2',
'test_render_clinDataReviewReport.R:758:2',
'test_render_clinDataReviewReport.R:816:2',
'test_render_clinDataReviewReport.R:874:2',
'test_render_clinDataReviewReport.R:1048:2',
'test_render_clinDataReviewReport.R:1119:3',
'test_render_clinDataReviewReport.R:1230:2',
'test_render_clinDataReviewReport.R:1371:3',
'test_render_clinDataReviewReport.R:1489:3', 'test_skeleton.R:92:2',
'test_skeleton.R:132:3', 'test_templates.R:53:2', 'test_templates.R:100:3',
'test_templates.R:162:2', 'test_templates.R:208:2', 'test_templates.R:255:2',
'test_templates.R:306:3', 'test_templates.R:369:2', 'test_templates.R:418:2'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_annotateData.R:207:2'): Data is correctly annotated based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:207:9
── Error ('test_annotateData.R:237:2'): Data is correctly annotated with a specified variable based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:237:9
── Error ('test_annotateData.R:371:2'): Data is correctly annotated based on the preset 'demographics' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:371:9
── Error ('test_annotateData.R:456:2'): Data is correctly annotated based on the preset 'exposed_subjects' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:456:9
── Error ('test_annotateData.R:490:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a subject variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:490:9
── Error ('test_annotateData.R:515:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a start time variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:515:9
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.6.1
Check: tests
Result: ERROR
Running 'testthat.R' [35s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 63%)
adding: report_dependencies1675872081fef/ (stored 0%)
adding: report_dependencies1675872081fef/file16758245c2546.html (deflated 8%)
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
══ Skipped tests (31) ══════════════════════════════════════════════════════════
• On CRAN (31): 'test_knitPrint.R:35:2', 'test_knitPrint.R:76:2',
'test_knitPrint.R:129:2', 'test_knitPrint.R:182:2', 'test_knitPrint.R:228:2',
'test_knitPrint.R:290:2', 'test_render_clinDataReviewReport.R:371:2',
'test_render_clinDataReviewReport.R:414:2',
'test_render_clinDataReviewReport.R:452:2',
'test_render_clinDataReviewReport.R:497:2',
'test_render_clinDataReviewReport.R:561:2',
'test_render_clinDataReviewReport.R:633:2',
'test_render_clinDataReviewReport.R:700:2',
'test_render_clinDataReviewReport.R:758:2',
'test_render_clinDataReviewReport.R:816:2',
'test_render_clinDataReviewReport.R:874:2',
'test_render_clinDataReviewReport.R:1048:2',
'test_render_clinDataReviewReport.R:1119:3',
'test_render_clinDataReviewReport.R:1230:2',
'test_render_clinDataReviewReport.R:1371:3',
'test_render_clinDataReviewReport.R:1489:3', 'test_skeleton.R:92:2',
'test_skeleton.R:132:3', 'test_templates.R:53:2', 'test_templates.R:100:3',
'test_templates.R:162:2', 'test_templates.R:208:2', 'test_templates.R:255:2',
'test_templates.R:306:3', 'test_templates.R:369:2', 'test_templates.R:418:2'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_annotateData.R:207:2'): Data is correctly annotated based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:207:9
── Error ('test_annotateData.R:237:2'): Data is correctly annotated with a specified variable based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:237:9
── Error ('test_annotateData.R:371:2'): Data is correctly annotated based on the preset 'demographics' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:371:9
── Error ('test_annotateData.R:456:2'): Data is correctly annotated based on the preset 'exposed_subjects' option ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:456:9
── Error ('test_annotateData.R:490:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a subject variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:490:9
── Error ('test_annotateData.R:515:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a start time variable ──
Error in `tempdir(check)`: NA in coercion to boolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:515:9
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.6.1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 4.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64