Last updated on 2025-03-30 10:53:45 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 31.99 | 2.15 | 34.14 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 135.48 | 0.02 | 135.50 | FAIL | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 7.26 | ERROR | |||
| r-devel-macos-arm64 | 2.0.0 | 21.00 | ERROR | |||
| r-devel-macos-x86_64 | 2.0.0 | 46.00 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.0 | 644.00 | 386.00 | 1030.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 185.86 | 0.01 | 185.87 | FAIL | |
| r-release-linux-x86_64 | 2.0.0 | 187.77 | 0.02 | 187.79 | FAIL | |
| r-release-macos-arm64 | 2.0.0 | 27.00 | ERROR | |||
| r-release-macos-x86_64 | 2.0.0 | 43.00 | ERROR | |||
| r-release-windows-x86_64 | 2.0.0 | 575.00 | 376.00 | 951.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.0.0 | 27.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 53.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 2.0.0 | 689.00 | 429.00 | 1118.00 | NOTE |
Version: 2.0.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-macos-arm64, r-devel-macos-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.0.0
Check: examples
Result: ERROR
Running examples in ‘RcppPlanc-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: onlineINMF
> ### Title: Perform Integrative Non-negative Matrix Factorization Using
> ### Online Learning
> ### Aliases: onlineINMF
>
> ### ** Examples
>
> library(Matrix)
>
> # Scenario 1 with sparse matrices
> set.seed(1)
> res1 <- onlineINMF(list(ctrl.sparse, stim.sparse),
+ minibatchSize = 50, k = 10, verbose = FALSE)
>
> # Scenario 2 with H5 dense matrices
> h5dense1 <- H5Mat(filename = system.file("extdata", "ctrl_dense.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ dataPath = "scaleData")
> h5dense2 <- H5Mat(filename = system.file("extdata", "stim_dense.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ dataPath = "scaleData")
> res2 <- onlineINMF(list(ctrl = h5dense1), minibatchSize = 50, k = 10, verbose = FALSE)
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppPlanc/extdata/ctrl_dense.h5
Mat path: scaleData
Dimension: 173 x 300
> res3 <- onlineINMF(list(ctrl = h5dense1),
+ newDatasets = list(stim = h5dense2),
+ Hinit = res2$H, Vinit = res2$V, Winit = res2$W,
+ Ainit = res2$A, Binit = res2$B,
+ minibatchSize = 50, k = 10, verbose = FALSE)
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppPlanc/extdata/ctrl_dense.h5
Mat path: scaleData
Dimension: 173 x 300
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppPlanc/extdata/stim_dense.h5
Mat path: scaleData
Dimension: 173 x 300
>
> # Scenario 3 with H5 sparse matrices
> h5sparse1 <- H5SpMat(filename = system.file("extdata", "ctrl_sparse.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ valuePath = "scaleDataSparse/data",
+ rowindPath = "scaleDataSparse/indices",
+ colptrPath = "scaleDataSparse/indptr",
+ nrow = nrow(ctrl.sparse),
+ ncol = ncol(ctrl.sparse))
> h5sparse2 <- H5SpMat(filename = system.file("extdata", "stim_sparse.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ valuePath = "scaleDataSparse/data",
+ rowindPath = "scaleDataSparse/indices",
+ colptrPath = "scaleDataSparse/indptr",
+ nrow = nrow(stim.sparse),
+ ncol = nrow(stim.sparse))
> res4 <- onlineINMF(list(ctrl = h5sparse1), minibatchSize = 50, k = 10, verbose = FALSE)
Error in .onlineINMF_h5sparse(sapply(objectList, function(x) x$filename), :
HDF5-API Errors:
error #000: ../../../src/H5F.c in H5Fopen(): line 827: unable to synchronously open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #001: ../../../src/H5F.c in H5F__open_api_common(): line 788: unable to open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #002: ../../../src/H5VLcallback.c in H5VL_file_open(): line 3680: open failed
class: HDF5
major: Virtual Object Layer
minor: Can't open object
error #003: ../../../src/H5VLcallback.c in H5VL__file_open(): line 3514: open failed
class: HDF5
major: Virtual Object Layer
minor: Can't open object
error #004: ../../../src/H5VLnative_file.c in H5VL__native_file_open(): line 128: unable to open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #005: ../../../src/H5Fint.c in H5F_open(): lin
Calls: onlineINMF -> .onlineINMF_h5sparse
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.0
Check: tests
Result: FAIL
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.0
Check: examples
Result: ERROR
Running examples in ‘RcppPlanc-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: onlineINMF
> ### Title: Perform Integrative Non-negative Matrix Factorization Using
> ### Online Learning
> ### Aliases: onlineINMF
>
> ### ** Examples
>
> library(Matrix)
>
> # Scenario 1 with sparse matrices
> set.seed(1)
> res1 <- onlineINMF(list(ctrl.sparse, stim.sparse),
+ minibatchSize = 50, k = 10, verbose = FALSE)
>
> # Scenario 2 with H5 dense matrices
> h5dense1 <- H5Mat(filename = system.file("extdata", "ctrl_dense.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ dataPath = "scaleData")
> h5dense2 <- H5Mat(filename = system.file("extdata", "stim_dense.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ dataPath = "scaleData")
> res2 <- onlineINMF(list(ctrl = h5dense1), minibatchSize = 50, k = 10, verbose = FALSE)
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppPlanc/extdata/ctrl_dense.h5
Mat path: scaleData
Dimension: 173 x 300
> res3 <- onlineINMF(list(ctrl = h5dense1),
+ newDatasets = list(stim = h5dense2),
+ Hinit = res2$H, Vinit = res2$V, Winit = res2$W,
+ Ainit = res2$A, Binit = res2$B,
+ minibatchSize = 50, k = 10, verbose = FALSE)
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppPlanc/extdata/ctrl_dense.h5
Mat path: scaleData
Dimension: 173 x 300
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppPlanc/extdata/stim_dense.h5
Mat path: scaleData
Dimension: 173 x 300
>
> # Scenario 3 with H5 sparse matrices
> h5sparse1 <- H5SpMat(filename = system.file("extdata", "ctrl_sparse.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ valuePath = "scaleDataSparse/data",
+ rowindPath = "scaleDataSparse/indices",
+ colptrPath = "scaleDataSparse/indptr",
+ nrow = nrow(ctrl.sparse),
+ ncol = ncol(ctrl.sparse))
> h5sparse2 <- H5SpMat(filename = system.file("extdata", "stim_sparse.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ valuePath = "scaleDataSparse/data",
+ rowindPath = "scaleDataSparse/indices",
+ colptrPath = "scaleDataSparse/indptr",
+ nrow = nrow(stim.sparse),
+ ncol = nrow(stim.sparse))
> res4 <- onlineINMF(list(ctrl = h5sparse1), minibatchSize = 50, k = 10, verbose = FALSE)
Error in .onlineINMF_h5sparse(sapply(objectList, function(x) x$filename), :
HDF5-API Errors:
error #000: ../../../src/H5F.c in H5Fopen(): line 827: unable to synchronously open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #001: ../../../src/H5F.c in H5F__open_api_common(): line 788: unable to open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #002: ../../../src/H5VLcallback.c in H5VL_file_open(): line 3680: open failed
class: HDF5
major: Virtual Object Layer
minor: Can't open object
error #003: ../../../src/H5VLcallback.c in H5VL__file_open(): line 3514: open failed
class: HDF5
major: Virtual Object Layer
minor: Can't open object
error #004: ../../../src/H5VLnative_file.c in H5VL__native_file_open(): line 128: unable to open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #005: ../../../src/H5Fint.c in H5F_open(): lin
Calls: onlineINMF -> .onlineINMF_h5sparse
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.0.0
Check: examples
Result: ERROR
Running examples in ‘RcppPlanc-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: onlineINMF
> ### Title: Perform Integrative Non-negative Matrix Factorization Using
> ### Online Learning
> ### Aliases: onlineINMF
>
> ### ** Examples
>
> library(Matrix)
>
> # Scenario 1 with sparse matrices
> set.seed(1)
> res1 <- onlineINMF(list(ctrl.sparse, stim.sparse),
+ minibatchSize = 50, k = 10, verbose = FALSE)
>
> # Scenario 2 with H5 dense matrices
> h5dense1 <- H5Mat(filename = system.file("extdata", "ctrl_dense.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ dataPath = "scaleData")
> h5dense2 <- H5Mat(filename = system.file("extdata", "stim_dense.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ dataPath = "scaleData")
> res2 <- onlineINMF(list(ctrl = h5dense1), minibatchSize = 50, k = 10, verbose = FALSE)
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppPlanc/extdata/ctrl_dense.h5
Mat path: scaleData
Dimension: 173 x 300
> res3 <- onlineINMF(list(ctrl = h5dense1),
+ newDatasets = list(stim = h5dense2),
+ Hinit = res2$H, Vinit = res2$V, Winit = res2$W,
+ Ainit = res2$A, Binit = res2$B,
+ minibatchSize = 50, k = 10, verbose = FALSE)
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppPlanc/extdata/ctrl_dense.h5
Mat path: scaleData
Dimension: 173 x 300
==H5Mat constructed==
H5File: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppPlanc/extdata/stim_dense.h5
Mat path: scaleData
Dimension: 173 x 300
>
> # Scenario 3 with H5 sparse matrices
> h5sparse1 <- H5SpMat(filename = system.file("extdata", "ctrl_sparse.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ valuePath = "scaleDataSparse/data",
+ rowindPath = "scaleDataSparse/indices",
+ colptrPath = "scaleDataSparse/indptr",
+ nrow = nrow(ctrl.sparse),
+ ncol = ncol(ctrl.sparse))
> h5sparse2 <- H5SpMat(filename = system.file("extdata", "stim_sparse.h5",
+ package = "RcppPlanc", mustWork = TRUE),
+ valuePath = "scaleDataSparse/data",
+ rowindPath = "scaleDataSparse/indices",
+ colptrPath = "scaleDataSparse/indptr",
+ nrow = nrow(stim.sparse),
+ ncol = nrow(stim.sparse))
> res4 <- onlineINMF(list(ctrl = h5sparse1), minibatchSize = 50, k = 10, verbose = FALSE)
Error in .onlineINMF_h5sparse(sapply(objectList, function(x) x$filename), :
HDF5-API Errors:
error #000: ../../../src/H5F.c in H5Fopen(): line 827: unable to synchronously open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #001: ../../../src/H5F.c in H5F__open_api_common(): line 788: unable to open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #002: ../../../src/H5VLcallback.c in H5VL_file_open(): line 3680: open failed
class: HDF5
major: Virtual Object Layer
minor: Can't open object
error #003: ../../../src/H5VLcallback.c in H5VL__file_open(): line 3514: open failed
class: HDF5
major: Virtual Object Layer
minor: Can't open object
error #004: ../../../src/H5VLnative_file.c in H5VL__native_file_open(): line 128: unable to open file
class: HDF5
major: File accessibility
minor: Unable to open file
error #005: ../../../src/H5Fint.c in H5F_open(): lin
Calls: onlineINMF -> .onlineINMF_h5sparse
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.0.0
Check: installed package size
Result: NOTE
installed size is 51.9Mb
sub-directories of 1Mb or more:
libs 49.8Mb
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64