Error(s) in re-building vignettes:
  ...
--- re-building ‘hacksig.Rmd’ using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’

SUMMARY: processing the following file failed:
  ‘hacksig.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hacksig.Rmd’ using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’

SUMMARY: processing the following file failed:
  ‘hacksig.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘hacksig.Rmd’ using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’

SUMMARY: processing the following file failed:
  ‘hacksig.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘hacksig.Rmd’ using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’

SUMMARY: processing the following file failed:
  ‘hacksig.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'hacksig.Rmd' using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building 'hacksig.Rmd'

SUMMARY: processing the following file failed:
  'hacksig.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hacksig.Rmd’ using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’

SUMMARY: processing the following file failed:
  ‘hacksig.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘hacksig.Rmd’ using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’

SUMMARY: processing the following file failed:
  ‘hacksig.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘hacksig.Rmd’ using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building ‘hacksig.Rmd’

SUMMARY: processing the following file failed:
  ‘hacksig.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'hacksig.Rmd' using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building 'hacksig.Rmd'

SUMMARY: processing the following file failed:
  'hacksig.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'hacksig.Rmd' using rmarkdown

Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `msigdbr()`:
! Unknown subcollection.
---
Backtrace:
    ▆
 1. ├─... %>% deframe()
 2. ├─tibble::deframe(.)
 3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))
 4. ├─tidyr::nest(., genes = c(gene_symbol))
 5. ├─dplyr::distinct(., gs_name, gene_symbol)
 6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hacksig.Rmd' failed with diagnostics:
Unknown subcollection.
--- failed re-building 'hacksig.Rmd'

SUMMARY: processing the following file failed:
  'hacksig.Rmd'

Error: Vignette re-building failed.
Execution halted