Maintainer: ‘Jonathan Bourne <jonathan.s.bourne@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jonathan Bourne <jonathan.s.bourne@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘rsetse-Ex.R’ failed
The error most likely occurred in:

> ### Name: calc_spring_area
> ### Title: Calculate the cross sectional area of the edge
> ### Aliases: calc_spring_area
> 
> ### ** Examples
> 
>  
> 
> library(igraph)

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

> set.seed(234)
> g_prep <- generate_peels_network("A") %>%
+  set.edge.attribute(., name = "edge_characteristic", value = rep(1:16, each = 10))
Warning: `set.edge.attribute()` was deprecated in igraph 2.0.0.
ℹ Please use `set_edge_attr()` instead.
Error in `igraph::graph_from_adjacency_matrix()`:
! Cannot create a graph object because the adjacency matrix contains
  NAs.
Backtrace:
     ▆
  1. ├─generate_peels_network("A") %>% ...
  2. ├─igraph::set.edge.attribute(...)
  3. │ ├─igraph::set_edge_attr(...)
  4. │ │ └─igraph:::is_complete_iterator(index)
  5. │ └─igraph::E(graph)
  6. │   └─igraph:::ensure_igraph(graph)
  7. └─rsetse::generate_peels_network("A")
  8.   └─rsetse:::generate_peels_network_internal(type, k_values)
  9.     └─igraph::graph_from_adjacency_matrix(...)
 10.       └─igraph:::ensure_no_na(adjmatrix, "adjacency matrix")
 11.         └─cli::cli_abort(...)
 12.           └─rlang::abort(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Categorical-and-continuous-features.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Categorical-and-continuous-features.Rmd’

--- re-building ‘separate-peels-quintet.Rmd’ using rmarkdown

Quitting from separate-peels-quintet.Rmd:44-74 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'separate-peels-quintet.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `igraph::graph_from_adjacency_matrix()`:
! Cannot create a graph object because the adjacency matrix contains
  NAs.
--- failed re-building ‘separate-peels-quintet.Rmd’

SUMMARY: processing the following file failed:
  ‘separate-peels-quintet.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘rsetse-Ex.R’ failed
The error most likely occurred in:

> ### Name: calc_spring_area
> ### Title: Calculate the cross sectional area of the edge
> ### Aliases: calc_spring_area
> 
> ### ** Examples
> 
>  
> 
> library(igraph)

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

> set.seed(234)
> g_prep <- generate_peels_network("A") %>%
+  set.edge.attribute(., name = "edge_characteristic", value = rep(1:16, each = 10))
Warning: `set.edge.attribute()` was deprecated in igraph 2.0.0.
ℹ Please use `set_edge_attr()` instead.
Error in `igraph::graph_from_adjacency_matrix()`:
! Cannot create a graph object because the adjacency matrix contains
  NAs.
Backtrace:
     ▆
  1. ├─generate_peels_network("A") %>% ...
  2. ├─igraph::set.edge.attribute(...)
  3. │ ├─igraph::set_edge_attr(...)
  4. │ │ └─igraph:::is_complete_iterator(index)
  5. │ └─igraph::E(graph)
  6. │   └─igraph:::ensure_igraph(graph)
  7. └─rsetse::generate_peels_network("A")
  8.   └─rsetse:::generate_peels_network_internal(type, k_values)
  9.     └─igraph::graph_from_adjacency_matrix(...)
 10.       └─igraph:::ensure_no_na(adjmatrix, "adjacency matrix")
 11.         └─cli::cli_abort(...)
 12.           └─rlang::abort(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘Categorical-and-continuous-features.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Categorical-and-continuous-features.Rmd’

--- re-building ‘separate-peels-quintet.Rmd’ using rmarkdown

Quitting from separate-peels-quintet.Rmd:44-74 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'separate-peels-quintet.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `igraph::graph_from_adjacency_matrix()`:
! Cannot create a graph object because the adjacency matrix contains
  NAs.
--- failed re-building ‘separate-peels-quintet.Rmd’

SUMMARY: processing the following file failed:
  ‘separate-peels-quintet.Rmd’

Error: Vignette re-building failed.
Execution halted