Running examples in ‘MiMIR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: ‘plotly’

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Running examples in ‘MiMIR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: ‘plotly’

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Running examples in ‘MiMIR-Ex.R’ failed
The error most likely occurred in:

> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: ‘plotly’

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Running examples in ‘MiMIR-Ex.R’ failed
The error most likely occurred in:

> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: ‘plotly’

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Running examples in 'MiMIR-Ex.R' failed
The error most likely occurred in:

> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Running examples in ‘MiMIR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: ‘plotly’

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Running examples in ‘MiMIR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: ‘plotly’

The following object is masked from ‘package:ggplot2’:

    last_plot

The following object is masked from ‘package:stats’:

    filter

The following object is masked from ‘package:graphics’:

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Running examples in 'MiMIR-Ex.R' failed
The error most likely occurred in:

> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted
Running examples in 'MiMIR-Ex.R' failed
The error most likely occurred in:

> ### Name: MetaboWAS
> ### Title: MetaboWAS
> ### Aliases: MetaboWAS
> 
> ### ** Examples
> 
> require(MiMIR)
> require(plotly)
Loading required package: plotly
Loading required package: ggplot2

Attaching package: 'plotly'

The following object is masked from 'package:ggplot2':

    last_plot

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout

> require(ggplot2)
> 
> #' #load the dataset
> metabolic_measures <- synthetic_metabolic_dataset
> phenotypes <- synthetic_phenotypic_dataset
> 
> #Computing a MetaboWAS for age corrected by sex
> MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex")
Error in `ggplot2::scale_y_continuous()`:
! `limits` must be a vector of length 2, not length 7.
Backtrace:
    ▆
 1. └─MiMIR::MetaboWAS(...)
 2.   └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))
 3.     └─ggplot2::continuous_scale(...)
 4.       └─ggplot2:::check_continuous_limits(limits, call = call)
 5.         └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)
 6.           └─cli::cli_abort(msg, call = call, arg = arg)
 7.             └─rlang::abort(...)
Execution halted