Error(s) in re-building vignettes:
  ...
--- re-building ‘RVA.Rmd’ using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’

SUMMARY: processing the following file failed:
  ‘RVA.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘RVA.Rmd’ using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’

SUMMARY: processing the following file failed:
  ‘RVA.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘XML’
  All declared Imports should be used.
Error(s) in re-building vignettes:
--- re-building ‘RVA.Rmd’ using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’

SUMMARY: processing the following file failed:
  ‘RVA.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘XML’
  All declared Imports should be used.
Error(s) in re-building vignettes:
--- re-building ‘RVA.Rmd’ using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’

SUMMARY: processing the following file failed:
  ‘RVA.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'RVA.Rmd' using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'RVA.Rmd'

SUMMARY: processing the following file failed:
  'RVA.Rmd'

Error: Vignette re-building failed.
Execution halted
Package required but not available: ‘GSVAdata’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘clusterProfiler’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required but not available: 'GSVAdata', 'org.Hs.eg.db'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Package required but not available: ‘GSVAdata’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Error(s) in re-building vignettes:
--- re-building 'RVA.Rmd' using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'RVA.Rmd'

SUMMARY: processing the following file failed:
  'RVA.Rmd'

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building 'RVA.Rmd' using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'RVA.Rmd'

SUMMARY: processing the following file failed:
  'RVA.Rmd'

Error: Vignette re-building failed.
Execution halted