Running ‘testthat.R’ [438s/218s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  +   library("checkmate")
  +   library("testthat")
  +   library("mlr3")
  +   library("paradox")
  +   library("mlr3pipelines")
  +   test_check("mlr3pipelines")
  + }
  Starting 2 test processes.
  > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_PipeOp.R: Training test_autotrain
  > test_PipeOp.R: Predicting test_autotrain
  > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  Saving _problems/test_filter_ensemble-294.R
  Saving _problems/test_filter_ensemble-307.R
  > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
  > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
  > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
  > test_multiplicities.R: 
  > test_multiplicities.R: [[1]]
  > test_multiplicities.R: [1] 0
  > test_multiplicities.R: 
  > test_multiplicities.R: 
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.232359: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.233057: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.243508: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.263711: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.314084: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.314538: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.322394: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.346589: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.37029: L-Isomap embed START
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.370896: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.384507: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.431091: embedding
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.432277: DONE
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.457181: L-Isomap embed START
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.457661: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.472389: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.518709: embedding
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.519943: DONE
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.605971: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.606414: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.641751: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.744873: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.777544: L-Isomap embed START
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.778197: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:30.808877: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.011988: embedding
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.016407: DONE
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.153255: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.155127: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.162551: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.181881: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.21362: L-Isomap embed START
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.214286: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.240543: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.283584: embedding
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.286432: DONE
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.41966: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.422407: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.429835: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.449253: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.493159: L-Isomap embed START
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.493842: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.508025: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.554907: embedding
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.556088: DONE
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.629682: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.630115: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.637001: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.654894: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.743954: L-Isomap embed START
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.744621: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.774234: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.82285: embedding
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.824104: DONE
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.906486: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.90695: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.915493: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.935722: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.986528: L-Isomap embed START
  > test_pipeop_isomap.R: 2025-11-22 16:12:31.987262: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.001921: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.046196: embedding
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.047416: DONE
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.12589: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.126355: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.13389: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.153006: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.199826: L-Isomap embed START
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.200462: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.226701: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.27192: embedding
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.273197: DONE
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.357986: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.358428: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.365198: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.383211: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.459232: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.459711: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.468831: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.488058: Classical Scaling
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.511642: Isomap START
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.512089: constructing knn graph
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.519428: calculating geodesic distances
  > test_pipeop_isomap.R: 2025-11-22 16:12:32.538722: Classical Scaling
  > test_pipeop_nmf.R: [PipeOpNMFstate]
  > test_pipeop_nmf.R: [PipeOpNMFstate]
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_task_preproc.R: Training debug_affectcols
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
  [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
  
  ══ Skipped tests (100) ═════════════════════════════════════════════════════════
  • On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
    'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
    'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
    'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
    'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
    'test_learner_weightedaverage.R:57:3',
    'test_learner_weightedaverage.R:105:3',
    'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
    'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
    'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
    'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
    'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
    'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
    'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
    'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
    'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
    'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
    'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
    'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
    'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
    'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
    'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
    'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
    'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
    'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
    'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
    'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_learnercv.R:31:3',
    'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
    'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
    'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
    'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
    'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
    'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
    'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
    'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
    'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
    'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
    'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
    'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
    'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
    'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
    'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
    'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
    'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
    'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
    'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
    'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
    'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
  • Skipping (1): 'test_GraphLearner.R:1278:3'
  • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
    'test_ppl.R:61:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
  Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
  Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
  Differences:
  `actual` is a character vector ('Mean relative difference: 0.2977876')
  `expected` is a logical vector (TRUE)
  
  Backtrace:
      ▆
   1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
   2.   └─testthat::expect_true(...)
  
  [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
  Error:
  ! Test failures.
  Execution halted