Maintainer: ‘ORPHANED’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Shipunov",
                      role = c("aut", "cre")),
               person(given = "Paul",
                      family = "Murrell",
                      role = "ctb"),
               person(given = "Marcello",
                      family = "D'Orazio",
                      role = "ctb"),
               person(given = "Stephen",
                      family = "Turner",
                      role = "ctb"),
               person(given = "Eugeny",
                      family = "Altshuler",
                      role = "ctb"),
               person(given = "Roland",
                      family = "Rau",
                      role = "ctb"),
               person(given = c("Marcus", "W"),
                      family = "Beck",
                      role = "ctb"),
               person(given = "Sebastian",
                      family = "Gibb",
                      role = "ctb"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = "ctb"),
               person(given = "Emmanuel",
                      family = "Paradis",
                      role = "ctb"),
               person(given = "Roger",
                      family = "Koenker",
                      role = "ctb"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "ctb"),
               person(family = "ORPHANED",
                      role = "cre"))
as necessary.
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) classifs.Rd:28: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:55: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:67: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:84: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:98: height/width attributes should be in pixels
Maintainer: ‘ORPHANED’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Shipunov",
                      role = c("aut", "cre")),
               person(given = "Paul",
                      family = "Murrell",
                      role = "ctb"),
               person(given = "Marcello",
                      family = "D'Orazio",
                      role = "ctb"),
               person(given = "Stephen",
                      family = "Turner",
                      role = "ctb"),
               person(given = "Eugeny",
                      family = "Altshuler",
                      role = "ctb"),
               person(given = "Roland",
                      family = "Rau",
                      role = "ctb"),
               person(given = c("Marcus", "W"),
                      family = "Beck",
                      role = "ctb"),
               person(given = "Sebastian",
                      family = "Gibb",
                      role = "ctb"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = "ctb"),
               person(given = "Emmanuel",
                      family = "Paradis",
                      role = "ctb"),
               person(given = "Roger",
                      family = "Koenker",
                      role = "ctb"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "ctb"),
               person(family = "ORPHANED",
                      role = "cre"))
as necessary.
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) classifs.Rd:28: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:55: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:67: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:84: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:98: height/width attributes should be in pixels
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) classifs.Rd:28: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:55: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:67: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:84: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:98: height/width attributes should be in pixels
Unknown package ‘ips’ in Rd xrefs
Running examples in ‘shipunov-Ex.R’ failed
The error most likely occurred in:

> ### Name: MrBayes
> ### Title: Calls MrBayes
> ### Aliases: MrBayes
> ### Keywords: interface
> 
> ### ** Examples
> 
> require(ips)
Loading required package: ips
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ips’
> data(ips.cox1)
Warning in data(ips.cox1) : data set ‘ips.cox1’ not found
> x <- ips.cox1[, 100:140]
Error: object 'ips.cox1' not found
Execution halted
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) classifs.Rd:28: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:55: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:67: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:84: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:98: height/width attributes should be in pixels
Unknown package ‘ips’ in Rd xrefs
Running examples in ‘shipunov-Ex.R’ failed
The error most likely occurred in:

> ### Name: MrBayes
> ### Title: Calls MrBayes
> ### Aliases: MrBayes
> ### Keywords: interface
> 
> ### ** Examples
> 
> require(ips)
Loading required package: ips
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ips’
> data(ips.cox1)
Warning in data(ips.cox1) : data set ‘ips.cox1’ not found
> x <- ips.cox1[, 100:140]
Error: object 'ips.cox1' not found
Execution halted
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) classifs.Rd:28: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:55: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:67: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:84: height/width attributes should be in pixels
checkRd: (-1) keys.Rd:98: height/width attributes should be in pixels
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^