Error(s) in re-building vignettes:
  ...
--- re-building ‘avoiding-bias.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘avoiding-bias.Rmd’

--- re-building ‘oncomsm.Rmd’ using rmarkdown

Quitting from oncomsm.Rmd:256-272 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `summarize()`:
ℹ In argument: `dt = t - lag(t)`.
ℹ In group 1: `iter = 1`, `group_id = "A"`, `subject_id = "ID00827488"`.
Caused by error:
! `dt` must be size 1, not 3.
ℹ To return more or less than 1 row per group, use `reframe()`.
---
Backtrace:
    ▆
 1. ├─... %>% ...
 2. ├─dplyr::summarize(., `median transition time` = median(dt), .groups = "drop")
 3. ├─dplyr::group_by(., group_id, from, to)
 4. ├─dplyr::filter(., to != "stable")
 5. ├─dplyr::summarize(...)
 6. ├─dplyr:::summarise.grouped_df(., dt = t - lag(t), from = lag(state), to = state, .groups = "drop")
 7. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
 8. │   └─base::withCallingHandlers(...)
 9. └─dplyr:::dplyr_internal_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'oncomsm.Rmd' failed with diagnostics:
ℹ In argument: `dt = t - lag(t)`.
ℹ In group 1: `iter = 1`, `group_id = "A"`, `subject_id = "ID00827488"`.
Caused by error:
! `dt` must be size 1, not 3.
ℹ To return more or less than 1 row per group, use `reframe()`.
--- failed re-building ‘oncomsm.Rmd’

--- re-building ‘prior-choice.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘prior-choice.Rmd’

SUMMARY: processing the following file failed:
  ‘oncomsm.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘avoiding-bias.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘avoiding-bias.Rmd’

--- re-building ‘oncomsm.Rmd’ using rmarkdown

Quitting from oncomsm.Rmd:256-272 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `summarize()`:
ℹ In argument: `dt = t - lag(t)`.
ℹ In group 1: `iter = 1`, `group_id = "A"`, `subject_id = "ID00827488"`.
Caused by error:
! `dt` must be size 1, not 2.
ℹ To return more or less than 1 row per group, use `reframe()`.
---
Backtrace:
    ▆
 1. ├─... %>% ...
 2. ├─dplyr::summarize(., `median transition time` = median(dt), .groups = "drop")
 3. ├─dplyr::group_by(., group_id, from, to)
 4. ├─dplyr::filter(., to != "stable")
 5. ├─dplyr::summarize(...)
 6. ├─dplyr:::summarise.grouped_df(., dt = t - lag(t), from = lag(state), to = state, .groups = "drop")
 7. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
 8. │   └─base::withCallingHandlers(...)
 9. └─dplyr:::dplyr_internal_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'oncomsm.Rmd' failed with diagnostics:
ℹ In argument: `dt = t - lag(t)`.
ℹ In group 1: `iter = 1`, `group_id = "A"`, `subject_id = "ID00827488"`.
Caused by error:
! `dt` must be size 1, not 2.
ℹ To return more or less than 1 row per group, use `reframe()`.
--- failed re-building ‘oncomsm.Rmd’

--- re-building ‘prior-choice.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘prior-choice.Rmd’

SUMMARY: processing the following file failed:
  ‘oncomsm.Rmd’

Error: Vignette re-building failed.
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘avoiding-bias.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘avoiding-bias.Rmd’

--- re-building ‘oncomsm.Rmd’ using rmarkdown

Quitting from oncomsm.Rmd:256-272 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `summarize()`:
ℹ In argument: `dt = t - lag(t)`.
ℹ In group 1: `iter = 1`, `group_id = "A"`, `subject_id = "ID00827488"`.
Caused by error:
! `dt` must be size 1, not 2.
ℹ To return more or less than 1 row per group, use `reframe()`.
---
Backtrace:
    ▆
 1. ├─... %>% ...
 2. ├─dplyr::summarize(., `median transition time` = median(dt), .groups = "drop")
 3. ├─dplyr::group_by(., group_id, from, to)
 4. ├─dplyr::filter(., to != "stable")
 5. ├─dplyr::summarize(...)
 6. ├─dplyr:::summarise.grouped_df(., dt = t - lag(t), from = lag(state), to = state, .groups = "drop")
 7. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
 8. │   └─base::withCallingHandlers(...)
 9. └─dplyr:::dplyr_internal_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'oncomsm.Rmd' failed with diagnostics:
ℹ In argument: `dt = t - lag(t)`.
ℹ In group 1: `iter = 1`, `group_id = "A"`, `subject_id = "ID00827488"`.
Caused by error:
! `dt` must be size 1, not 2.
ℹ To return more or less than 1 row per group, use `reframe()`.
--- failed re-building ‘oncomsm.Rmd’

--- re-building ‘prior-choice.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘prior-choice.Rmd’

SUMMARY: processing the following file failed:
  ‘oncomsm.Rmd’

Error: Vignette re-building failed.
Execution halted
installed size is 48.2Mb
  sub-directories of 1Mb or more:
    doc    1.1Mb
    libs  46.0Mb
GNU make is a SystemRequirements.
installed size is 50.0Mb
  sub-directories of 1Mb or more:
    doc    1.1Mb
    libs  47.8Mb
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.