Running examples in ‘neuroimaGene-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘neuroimaGene.Rmd’ using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘neuroimaGene.Rmd’

SUMMARY: processing the following file failed:
  ‘neuroimaGene.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘neuroimaGene-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘neuroimaGene.Rmd’ using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘neuroimaGene.Rmd’

SUMMARY: processing the following file failed:
  ‘neuroimaGene.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘neuroimaGene-Ex.R’ failed
The error most likely occurred in:

> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘neuroimaGene.Rmd’ using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘neuroimaGene.Rmd’

SUMMARY: processing the following file failed:
  ‘neuroimaGene.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘neuroimaGene-Ex.R’ failed
The error most likely occurred in:

> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘neuroimaGene.Rmd’ using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘neuroimaGene.Rmd’

SUMMARY: processing the following file failed:
  ‘neuroimaGene.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in 'neuroimaGene-Ex.R' failed
The error most likely occurred in:

> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'neuroimaGene.Rmd' using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building 'neuroimaGene.Rmd'

SUMMARY: processing the following file failed:
  'neuroimaGene.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in ‘neuroimaGene-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘neuroimaGene.Rmd’ using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘neuroimaGene.Rmd’

SUMMARY: processing the following file failed:
  ‘neuroimaGene.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘neuroimaGene-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘neuroimaGene.Rmd’ using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘neuroimaGene.Rmd’

SUMMARY: processing the following file failed:
  ‘neuroimaGene.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in 'neuroimaGene-Ex.R' failed
The error most likely occurred in:

> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'neuroimaGene.Rmd' using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building 'neuroimaGene.Rmd'

SUMMARY: processing the following file failed:
  'neuroimaGene.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'neuroimaGene-Ex.R' failed
The error most likely occurred in:

> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
 2.   └─ggseg::ggseg(...)
 3.     └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
 4.       └─lifecycle:::deprecate_stop0(msg)
 5.         └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'neuroimaGene.Rmd' using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   ├─data.table::as.data.table(...)
 3.   ├─base::merge(...)
 4.   ├─data.table::merge.data.table(...)
 5.   │ └─data.table::is.data.table(y)
 6.   └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building 'neuroimaGene.Rmd'

SUMMARY: processing the following file failed:
  'neuroimaGene.Rmd'

Error: Vignette re-building failed.
Execution halted