Maintainer: ‘Josh Gardner <jpgard@umich.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘auctestr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘basic-auctestr-vignette.Rmd’ using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘basic-auctestr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘basic-auctestr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Josh Gardner <jpgard@umich.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘auctestr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘basic-auctestr-vignette.Rmd’ using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘basic-auctestr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘basic-auctestr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘tidyr’
  All declared Imports should be used.
Running examples in ‘auctestr-Ex.R’ failed
The error most likely occurred in:

> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘basic-auctestr-vignette.Rmd’ using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘basic-auctestr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘basic-auctestr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘tidyr’
  All declared Imports should be used.
Running examples in ‘auctestr-Ex.R’ failed
The error most likely occurred in:

> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
--- re-building ‘basic-auctestr-vignette.Rmd’ using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘basic-auctestr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘basic-auctestr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in 'auctestr-Ex.R' failed
The error most likely occurred in:

> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'basic-auctestr-vignette.Rmd' using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building 'basic-auctestr-vignette.Rmd'

SUMMARY: processing the following file failed:
  'basic-auctestr-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in ‘auctestr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘basic-auctestr-vignette.Rmd’ using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘basic-auctestr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘basic-auctestr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘auctestr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘basic-auctestr-vignette.Rmd’ using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘basic-auctestr-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘basic-auctestr-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in 'auctestr-Ex.R' failed
The error most likely occurred in:

> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'basic-auctestr-vignette.Rmd' using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building 'basic-auctestr-vignette.Rmd'

SUMMARY: processing the following file failed:
  'basic-auctestr-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'auctestr-Ex.R' failed
The error most likely occurred in:

> ### Name: auc_compare
> ### Title: Compare AUC values using the FBH method.
> ### Aliases: auc_compare
> 
> ### ** Examples
> 
> ## load sample experiment data
> data(sample_experiment_data)
> ## compare VariantA of ModelA and ModelB
> auc_compare(sample_experiment_data,
+     compare_values = c('ModelA', 'ModelB'),
+     filter_value = c('VariantA'),
+     time_col = 'time',
+     outcome_col = 'auc',
+     compare_col = 'model_id',
+     over_col = 'dataset',
+     filter_col = 'model_variant')
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
 7.         └─rlang::cnd_signal(...)
Execution halted
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(auctestr)
  > 
  > test_check("auctestr")
  Saving _problems/test-auc-compare-8.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────
  <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
  Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
  ℹ Please use `filter()` instead.
  ℹ See vignette('programming') for more help
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3
    2. │ └─testthat::quasi_label(enquo(object), label)
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─auctestr::auc_compare(...)
    5. │ └─... %>% dplyr::filter_(filter_str)
    6. └─dplyr::filter_(., filter_str)
    7.   └─dplyr:::lazy_defunct("filter")
    8.     └─lifecycle::deprecate_stop(...)
    9.       └─lifecycle:::deprecate_stop0(msg)
   10.         └─rlang::cnd_signal(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
Error(s) in re-building vignettes:
--- re-building 'basic-auctestr-vignette.Rmd' using rmarkdown

Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
    ▆
 1. ├─auctestr::auc_compare(...)
 2. │ └─... %>% dplyr::filter_(filter_str)
 3. └─dplyr::filter_(., filter_str)
 4.   └─dplyr:::lazy_defunct("filter")
 5.     └─lifecycle::deprecate_stop(...)
 6.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics:
`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
--- failed re-building 'basic-auctestr-vignette.Rmd'

SUMMARY: processing the following file failed:
  'basic-auctestr-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted