Running examples in ‘HiCociety-Ex.R’ failed
The error most likely occurred in:

> ### Name: add_Genes
> ### Title: Add gene information
> ### Aliases: add_Genes
> 
> ### ** Examples
> 
> modulefile = system.file('extdata','mouse_naiveCD4T_Vahedi_short.rds',
+ package = 'HiCocietyExample')
> mycom = readRDS(modulefile)
> mycom$ModuleSummary = add_Genes(mycom$ModuleSummary,
+ 'TxDb.Mmusculus.UCSC.mm10.knownGene')
Error in add_Genes(mycom$ModuleSummary, "TxDb.Mmusculus.UCSC.mm10.knownGene") : 
  Package TxDb.Mmusculus.UCSC.mm10.knownGene not found
Execution halted
Running examples in ‘HiCociety-Ex.R’ failed
The error most likely occurred in:

> ### Name: add_Genes
> ### Title: Add gene information
> ### Aliases: add_Genes
> 
> ### ** Examples
> 
> modulefile = system.file('extdata','mouse_naiveCD4T_Vahedi_short.rds',
+ package = 'HiCocietyExample')
> mycom = readRDS(modulefile)
> mycom$ModuleSummary = add_Genes(mycom$ModuleSummary,
+ 'TxDb.Mmusculus.UCSC.mm10.knownGene')
Error in add_Genes(mycom$ModuleSummary, "TxDb.Mmusculus.UCSC.mm10.knownGene") : 
  Package TxDb.Mmusculus.UCSC.mm10.knownGene not found
Execution halted
Packages suggested but not available for checking:
  'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene', 'org.Mm.eg.db'
installed size is  6.6Mb
Running examples in ‘HiCociety-Ex.R’ failed
The error most likely occurred in:

> ### Name: add_Genes
> ### Title: Add gene information
> ### Aliases: add_Genes
> 
> ### ** Examples
> 
> modulefile = system.file('extdata','mouse_naiveCD4T_Vahedi_short.rds',
+ package = 'HiCocietyExample')
> mycom = readRDS(modulefile)
> mycom$ModuleSummary = add_Genes(mycom$ModuleSummary,
+ 'TxDb.Mmusculus.UCSC.mm10.knownGene')
Error in add_Genes(mycom$ModuleSummary, "TxDb.Mmusculus.UCSC.mm10.knownGene") : 
  Package TxDb.Mmusculus.UCSC.mm10.knownGene not found
Execution halted
Packages suggested but not available for checking:
  'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene'
installed size is  6.6Mb
Running examples in ‘HiCociety-Ex.R’ failed
The error most likely occurred in:

> ### Name: add_Genes
> ### Title: Add gene information
> ### Aliases: add_Genes
> 
> ### ** Examples
> 
> modulefile = system.file('extdata','mouse_naiveCD4T_Vahedi_short.rds',
+ package = 'HiCocietyExample')
> mycom = readRDS(modulefile)
> mycom$ModuleSummary = add_Genes(mycom$ModuleSummary,
+ 'TxDb.Mmusculus.UCSC.mm10.knownGene')
Error in add_Genes(mycom$ModuleSummary, "TxDb.Mmusculus.UCSC.mm10.knownGene") : 
  Package TxDb.Mmusculus.UCSC.mm10.knownGene not found
Execution halted
installed size is  6.8Mb