checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘Tendril-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘TendrilUsage.Rmd’ using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building ‘TendrilUsage.Rmd’

SUMMARY: processing the following file failed:
  ‘TendrilUsage.Rmd’

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘Tendril-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘TendrilUsage.Rmd’ using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building ‘TendrilUsage.Rmd’

SUMMARY: processing the following file failed:
  ‘TendrilUsage.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘Tendril-Ex.R’ failed
The error most likely occurred in:

> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘TendrilUsage.Rmd’ using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building ‘TendrilUsage.Rmd’

SUMMARY: processing the following file failed:
  ‘TendrilUsage.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘Tendril-Ex.R’ failed
The error most likely occurred in:

> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘TendrilUsage.Rmd’ using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building ‘TendrilUsage.Rmd’

SUMMARY: processing the following file failed:
  ‘TendrilUsage.Rmd’

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in 'Tendril-Ex.R' failed
The error most likely occurred in:

> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'TendrilUsage.Rmd' using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building 'TendrilUsage.Rmd'

SUMMARY: processing the following file failed:
  'TendrilUsage.Rmd'

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘Tendril-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘TendrilUsage.Rmd’ using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building ‘TendrilUsage.Rmd’

SUMMARY: processing the following file failed:
  ‘TendrilUsage.Rmd’

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in ‘Tendril-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘TendrilUsage.Rmd’ using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building ‘TendrilUsage.Rmd’

SUMMARY: processing the following file failed:
  ‘TendrilUsage.Rmd’

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in 'Tendril-Ex.R' failed
The error most likely occurred in:

> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'TendrilUsage.Rmd' using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building 'TendrilUsage.Rmd'

SUMMARY: processing the following file failed:
  'TendrilUsage.Rmd'

Error: Vignette re-building failed.
Execution halted
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Running examples in 'Tendril-Ex.R' failed
The error most likely occurred in:

> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
> 
> ### ** Examples
> 
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
 7.             └─rlang::cnd_signal(...)
Execution halted
Error(s) in re-building vignettes:
--- re-building 'TendrilUsage.Rmd' using rmarkdown

Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
    ▆
 1. └─Tendril::Tendril(...)
 2.   └─Tendril:::dataSetup(...)
 3.     └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
 4.       └─dplyr:::lazy_defunct("rename", hint = FALSE)
 5.         └─lifecycle::deprecate_stop(...)
 6.           └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building 'TendrilUsage.Rmd'

SUMMARY: processing the following file failed:
  'TendrilUsage.Rmd'

Error: Vignette re-building failed.
Execution halted