Running examples in ‘MiscMetabar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_pq
> ### Title: Read phyloseq object from multiple csv tables and a phylogenetic
> ###   tree in Newick format.
> ### Aliases: read_pq
> 
> ### ** Examples
> 
> write_pq(data_fungi, path = paste0(tempdir(), "/phyloseq"))
Error in .local(x, row.names, optional, ...) : 
  unused argument (validRN = FALSE)
Calls: write_pq ... as.data.frame.Vector -> as.data.frame -> as.data.frame
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
SRS_curve_pq             8.631  0.400  10.414
ggscatt_pq               6.567  0.064   9.016
psmelt_samples_pq        5.934  0.147   7.963
plot_refseq_extremity_pq 5.929  0.044   8.643
LCBD_pq                  5.568  0.290   6.945
plot_complexity_pq       5.399  0.015   6.788
multipatt_pq             4.352  0.250   5.450
hill_curves_pq           4.353  0.044   6.304
Running examples in ‘MiscMetabar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_pq
> ### Title: Read phyloseq object from multiple csv tables and a phylogenetic
> ###   tree in Newick format.
> ### Aliases: read_pq
> 
> ### ** Examples
> 
> write_pq(data_fungi, path = paste0(tempdir(), "/phyloseq"))
Error in .local(x, row.names, optional, ...) : 
  unused argument (validRN = FALSE)
Calls: write_pq ... as.data.frame.Vector -> as.data.frame -> as.data.frame
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
LCBD_pq      5.073  0.361   7.028
SRS_curve_pq 4.675  0.315   5.882
ggscatt_pq   4.065  0.026   5.118
Data files with namespace references not in the recursive strong
package dependencies:
  data/data_fungi.rda: XVector
  data/data_fungi_mini.rda: XVector
  data/data_fungi_sp_known.rda: XVector
See section 'Data in packages' in the 'Writing R Extensions' manual.
Running examples in ‘MiscMetabar-Ex.R’ failed
The error most likely occurred in:

> ### Name: read_pq
> ### Title: Read phyloseq object from multiple csv tables and a phylogenetic
> ###   tree in Newick format.
> ### Aliases: read_pq
> 
> ### ** Examples
> 
> write_pq(data_fungi, path = paste0(tempdir(), "/phyloseq"))
Error in .local(x, row.names, optional, ...) : 
  unused argument (validRN = FALSE)
Calls: write_pq ... as.data.frame.Vector -> as.data.frame -> as.data.frame
Execution halted
Data files with namespace references not in the recursive strong
package dependencies:
  data/data_fungi.rda: XVector
  data/data_fungi_mini.rda: XVector
  data/data_fungi_sp_known.rda: XVector
See section 'Data in packages' in the 'Writing R Extensions' manual.
Running examples in ‘MiscMetabar-Ex.R’ failed
The error most likely occurred in:

> ### Name: read_pq
> ### Title: Read phyloseq object from multiple csv tables and a phylogenetic
> ###   tree in Newick format.
> ### Aliases: read_pq
> 
> ### ** Examples
> 
> write_pq(data_fungi, path = paste0(tempdir(), "/phyloseq"))
Error in .local(x, row.names, optional, ...) : 
  unused argument (validRN = FALSE)
Calls: write_pq ... as.data.frame.Vector -> as.data.frame -> as.data.frame
Execution halted
Data files with namespace references not in the recursive strong
package dependencies:
  data/data_fungi.rda: XVector
  data/data_fungi_mini.rda: XVector
  data/data_fungi_sp_known.rda: XVector
See section 'Data in packages' in the 'Writing R Extensions' manual.
Running examples in 'MiscMetabar-Ex.R' failed
The error most likely occurred in:

> ### Name: read_pq
> ### Title: Read phyloseq object from multiple csv tables and a phylogenetic
> ###   tree in Newick format.
> ### Aliases: read_pq
> 
> ### ** Examples
> 
> write_pq(data_fungi, path = paste0(tempdir(), "/phyloseq"))
Error in .local(x, row.names, optional, ...) : 
  unused argument (validRN = FALSE)
Calls: write_pq ... as.data.frame.Vector -> as.data.frame -> as.data.frame
Execution halted